Model:Bio: Difference between revisions

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{{End a table}}
{{Model identity2
{{Model identity2
|Categories=Marine
|ModelDomain=Marine
|One-line model description=Biogenic mixing of marine sediments
|One-line model description=Biogenic mixing of marine sediments
|Extended model description=Biogenic mixing of marine sediments
|Extended model description=Biogenic mixing of marine sediments
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|Town / City=Boulder
|Town / City=Boulder
|Postal code=80305
|Postal code=80305
|Country=United States
|State=Colorado
|State=Colorado
|Country=USA
|Email address=huttone@colorado.edu
|Email address=huttone@colorado.edu
}}
}}
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|Programming language=C
|Programming language=C
|Code optimized=Single Processor
|Code optimized=Single Processor
|Multiple processors implemented=
|Nr of distributed processors=
|Nr of shared processors=
|Start year development=2008
|Start year development=2008
|Does model development still take place?=Yes
|Does model development still take place?=Yes
|End year development=
|DevelopmentCode=As is, no updates are provided
|Model availability=As code, As teaching tool
|DevelopmentCodeYearChecked=2020
|Source code availability=Through CSDMS repository
|Source code availability=Through web repository
|Source web address=
|Source web address=https://github.com/mcflugen/sedflux
|Program license type=GPL v2
|Program license type=GPL v2
|Program license type other=
|Memory requirements=1GB at the most
|Memory requirements=1GB at the most
|Typical run time=Seconds to minutes
|Typical run time=Seconds to minutes
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|Output format=ASCII
|Output format=ASCII
|Pre-processing software needed?=No
|Pre-processing software needed?=No
|Describe pre-processing software=
|Post-processing software needed?=No
|Post-processing software needed?=No
|Describe post-processing software=
|Visualization software needed?=No
|Visualization software needed?=No
|If above answer is yes=
|Other visualization software=
}}
}}
{{Process description model}}
{{Process description model}}
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{{Users groups model}}
{{Users groups model}}
{{Documentation model
{{Documentation model
|Provide key papers on model if any=Key Papers:
*'''Boudreau, B. P., 1986. Mathematics of tracer mixing in sediments: 1. Spatially dependent, Diffusive mixing. American Journal of Science. 286: 161~198.'''
*'''Boudreau, B. P.,1986. Mathematics of thacer mixing in sediments: 2. Nonlocal mixing and biological conveyor-belt phenomena. American Journal of Science. 286: 199~238.'''
*'''Boudreau, B. P., 2000. The mathematics of early diagenesis: from worms to waves. Mathematics of early diagenesis. 38(3): 389~416, Doi: ([http://dx.doi.org/10.1029/2000RG000081 10.1029/2000RG000081])'''
|Manual model available=No
|Manual model available=No
|Model manual=
}}
}}
{{Additional comments model}}
{{Additional comments model}}
{{CSDMS staff part
{{CSDMS staff part
|OpenMI compliant=No but possible
|OpenMI compliant=No but possible
|IRF interface=No but possible
|CMT component=No but possible
|CCA component=No but possible
|CCA component=No but possible
|IRF interface=No but possible
|CMT component=Not yet
}}
}}
{{DOI information
{{DOI information
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|DOI assigned to model version=0.1
|DOI assigned to model version=0.1
|DOI-year assigned to model version=2011
|DOI-year assigned to model version=2011
|DOI-filelink=https://csdms.colorado.edu/pub/models/doi-source-code/sedflux-10.1594.IEDA.100161-2.1.tar.gz
}}
}}
{{Start coupled table}}
{{Start coupled table}}
{{End a table}}
{{End a table}}
{{End headertab}}
{{End headertab}}
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{{#ifexist:Template:{{#sub:{{PAGENAME}}|0|1}}{{#sub:{{lc:{{PAGENAME}}}}|1}} download stats | ==Download statistics==
 
{{{{#sub:{{PAGENAME}}|0|1}}{{#sub:{{lc:{{PAGENAME}}}}|1}} download stats}} | }}


==Introduction==
==Introduction==
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== History ==
== History ==


== Papers ==
== References  ==
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== Issues ==
== Issues ==


== Help ==
== Help ==
{{#ifexist:Model_help:{{PAGENAME}}|[[Model_help:{{PAGENAME}}]]|}}


== Input Files ==
== Input Files ==


== Output Files ==
== Output Files ==
== Download source code ==
{{Download_Model|bio}}
[[Category:Marine]]

Latest revision as of 20:17, 16 September 2020



Bio


Metadata

Also known as
Model type Single
Model part of larger framework
Note on status model
Date note status model
Incorporated models or components:
Spatial dimensions
Spatial extent
Model domain Marine
One-line model description Biogenic mixing of marine sediments
Extended model description Biogenic mixing of marine sediments
Keywords:

sediment transport,

Name Eric Hutton
Type of contact Model developer
Institute / Organization CSDMS, INSTAAR, University of Colorado
Postal address 1 1560 30th street
Postal address 2
Town / City Boulder
Postal code 80305
State Colorado
Country United States
Email address huttone@colorado.edu
Phone
Fax


Name Bjarte Hannisdal
Type of contact
Institute / Organization
Postal address 1
Postal address 2
Town / City
Postal code
State
Country
Email address
Phone
Fax


Supported platforms
Unix, Mac OS, Windows
Other platform
Programming language

C

Other program language
Code optimized Single Processor
Multiple processors implemented
Nr of distributed processors
Nr of shared processors
Start year development 2008
Does model development still take place? Yes
If above answer is no, provide end year model development
Code development status As is, no updates are provided
When did you indicate the 'code development status'? 2020
Model availability
Source code availability
(Or provide future intension) 		Through web repository
Source web address https://github.com/mcflugen/sedflux
Source csdms web address
Program license type GPL v2
Program license type other
Memory requirements 1GB at the most
Typical run time Seconds to minutes


Describe input parameters
Input format ASCII
Other input format
Describe output parameters
Output format ASCII
Other output format
Pre-processing software needed? No
Describe pre-processing software
Post-processing software needed? No
Describe post-processing software
Visualization software needed? No
If above answer is yes
Other visualization software


Describe processes represented by the model
Describe key physical parameters and equations
Describe length scale and resolution constraints
Describe time scale and resolution constraints
Describe any numerical limitations and issues


Describe available calibration data sets
Upload calibration data sets if available:
Describe available test data sets
Upload test data sets if available:
Describe ideal data for testing


Do you have current or future plans for collaborating with other researchers?
Is there a manual available? No
Upload manual if available:
Model website if any
Model forum / discussion board
Comments


This part will be filled out by CSDMS staff

OpenMI compliant No but possible
BMI compliant No but possible
WMT component No but possible
PyMT component
Is this a data component
DOI model 10.1594/IEDA/100099
For model version 0.1
Year version submitted 2011
Link to file https://csdms.colorado.edu/pub/models/doi-source-code/sedflux-10.1594.IEDA.100161-2.1.tar.gz
Can be coupled with:
Model info
Authors
Eric Hutton
Hannisdal
Source code
DOI

Model citations
Nr. of publications: 4
Total citations: 495
h-index: 3
m-quotient: 0.08
QR-code
Qrcode Bio.png
Link to this page
Other models by author




Introduction

History

References



Nr. of publications: 4
Total citations: 495
h-index: 3
m-quotient: 0.08



Featured publication(s)YearModel describedType of ReferenceCitations
Boudreau, B.P. 1986. Mathematics of tracer mixing in sediments: 1. Spatially dependent, Diffusive mixing. American Journal of Science, 286, 161~198. 10.2475/ajs.286.3.161
(View/edit entry)		1986 Bio
 Model overview 261
Boudreau, B.P.; 1986. Mathematics of thacer mixing in sediments: 2. Nonlocal mixing and biological conveyor-belt phenomena. American Journal of Science, 286, 199~238. 10.2475/ajs.286.3.199
(View/edit entry)		1986 Bio
 Model overview 180
See more publications of Bio


Issues

Help

Input Files

Output Files

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