Model:Bio: Difference between revisions

Latest revision as of 19:17, 16 September 2020

Bio

Metadata

Also known as
Model type	Single
Model part of larger framework
Note on status model
Date note status model

Incorporated models or components:

Spatial dimensions
Spatial extent
Model domain	Marine
One-line model description	Biogenic mixing of marine sediments
Extended model description	Biogenic mixing of marine sediments

Keywords:	sediment transport,

Name	Eric Hutton
Type of contact	Model developer
Institute / Organization	CSDMS, INSTAAR, University of Colorado
Postal address 1	1560 30th street
Postal address 2
Town / City	Boulder
Postal code	80305
State	Colorado
Country	United States
Email address	huttone@colorado.edu
Phone
Fax

Name	Bjarte Hannisdal
Type of contact
Institute / Organization
Postal address 1
Postal address 2
Town / City
Postal code
State
Country
Email address
Phone
Fax

Supported platforms	Unix, Mac OS, Windows
Other platform
Programming language	C
Other program language
Code optimized	Single Processor
Multiple processors implemented
Nr of distributed processors
Nr of shared processors
Start year development	2008
Does model development still take place?	Yes
If above answer is no, provide end year model development
Code development status	As is, no updates are provided
When did you indicate the 'code development status'?	2020
Model availability
Source code availability (Or provide future intension)	Through web repository
Source web address	https://github.com/mcflugen/sedflux
Source csdms web address
Program license type	GPL v2
Program license type other
Memory requirements	1GB at the most
Typical run time	Seconds to minutes

Describe input parameters
Input format	ASCII
Other input format
Describe output parameters
Output format	ASCII
Other output format
Pre-processing software needed?	No
Describe pre-processing software
Post-processing software needed?	No
Describe post-processing software
Visualization software needed?	No
If above answer is yes
Other visualization software

Describe processes represented by the model
Describe key physical parameters and equations
Describe length scale and resolution constraints
Describe time scale and resolution constraints
Describe any numerical limitations and issues

Describe available calibration data sets
Upload calibration data sets if available:
Describe available test data sets
Upload test data sets if available:
Describe ideal data for testing

Do you have current or future plans for collaborating with other researchers?

Is there a manual available?	No
Upload manual if available:
Model website if any
Model forum / discussion board

Comments

This part will be filled out by CSDMS staff

OpenMI compliant	No but possible
BMI compliant	No but possible
WMT component	No but possible
PyMT component
Is this a data component

DOI model	10.1594/IEDA/100099
For model version	0.1
Year version submitted	2011
Link to file	https://csdms.colorado.edu/pub/models/doi-source-code/sedflux-10.1594.IEDA.100161-2.1.tar.gz

Can be coupled with:

Model info

Authors

Eric Hutton

Hannisdal

Source code

Go to external source code site

DOI

Download Bio version: 0.1
Doi: 10.1594/IEDA/100099

Model citations

Nr. of publications:	4
Total citations:	511
h-index:	3
m-quotient:	0.08

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Other models by author

Introduction

History

References

Nr. of publications:	4
Total citations:	511
h-index:	3
m-quotient:	0.08

Featured publication(s)	Year	Model described	Type of Reference	Citations
Boudreau, B.P. 1986. Mathematics of tracer mixing in sediments: 1. Spatially dependent, Diffusive mixing. American Journal of Science, 286, 161~198. 10.2475/ajs.286.3.161 (View/edit entry)	1986	Bio	Model overview	271
Boudreau, B.P.; 1986. Mathematics of thacer mixing in sediments: 2. Nonlocal mixing and biological conveyor-belt phenomena. American Journal of Science, 286, 199~238. 10.2475/ajs.286.3.199 (View/edit entry)	1986	Bio	Model overview	185
See more publications of Bio

Issues

Help

Input Files

Output Files

@@ Line 5: / Line 5: @@
 {{End a table}}
 {{Model identity2
-|Categories=Marine
+|ModelDomain=Marine
 |One-line model description=Biogenic mixing of marine sediments
 |Extended model description=Biogenic mixing of marine sediments
@@ Line 22: / Line 22: @@
 |Town / City=Boulder
 |Postal code=80305
+|Country=United States
 |State=Colorado
-|Country=United States
 |Email address=huttone@colorado.edu
 }}
@@ Line 36: / Line 36: @@
 |Start year development=2008
 |Does model development still take place?=Yes
+|DevelopmentCode=As is, no updates are provided
+|DevelopmentCodeYearChecked=2020
 |Source code availability=Through web repository
 |Source web address=https://github.com/mcflugen/sedflux
@@ Line 59: / Line 61: @@
 |OpenMI compliant=No but possible
 |IRF interface=No but possible
-|CMT component=Not yet
+|CMT component=No but possible
 |CCA component=No but possible
 }}
@@ Line 66: / Line 68: @@
 |DOI assigned to model version=0.1
 |DOI-year assigned to model version=2011
-|DOI-filelink=http://csdms.colorado.edu/pub/models/doi-source-code/sedflux-10.1594.IEDA.100161-2.1.tar.gz
+|DOI-filelink=https://csdms.colorado.edu/pub/models/doi-source-code/sedflux-10.1594.IEDA.100161-2.1.tar.gz
 }}
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