User:Mpiper: Difference between revisions

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{{Signup information member  
{{Signup information member
|First name member=Mark
|First name member=Mark
|Last name member=Piper
|Last name member=Piper
|Picture member=Mp-1.jpg
|Pronouns=he/him/his
|Picture member=Mp-with-coffee.jpg
|Institute member=CSDMS
|Institute member=CSDMS
|Postal address 1 member=4001 Discovery Dr.
|City member=Boulder
|City member=Boulder
|Postal code member=80303
|Country member=United States
|Country member=United States
|State member=Colorado
|State member=Colorado
|Confirm email member=mark.piper@colorado.edu
|Confirm email member=mark.piper@colorado.edu
|Working group member=Education and Knowledge Transfer (EKT) Working Group, Cyberinformatics and Numerics Working Group
|Working group member=Education and Knowledge Transfer (EKT) Working Group, Cyberinformatics and Numerics Working Group
|Emaillist group member=no
|Emaillist group member=yes
}}  
|Memberagreement=I have read and agree to the Privacy Policy
=WMT=
}}
<div>{{TOC limit|3}}</div>
 
==Software development and services==
 
* [[CSDMS Best Practices for Software Development]], a document (under construction) that Eric, Mariela, and I have been thinking about for a long time
* [[Test shell type]]
* [[Installing a Python distro for testing and development]]
** [[Shorter Miniconda install instructions]]
* Landing page for CSDMS software products: https://csdms.github.io
* [[SoftwareReleases]]
* [[RSE]] and [[Training]] pages
* [[OfficeHours]]
* [[Roadshows]]
 
==EKT projects==
 
* [[ESPIn]]
* [[ESPIn2023]]
* [[ESPIn2024]]
* [[VisitingScholars2024]]
 
==BMI and componentization==
 
* [[Instructions_for_adding_a_BMI_to_a_model|Instructions]] for adding a BMI to a model
* [[Turning a model into a CSDMS component]]
 
==pymt==
 
''pymt'' is the Python Modeling Toolkit.
 
* The pymt landing page: https://csdms.github.io/pymt
* The pymt page on the CSDMS wiki: [[PyMT]]
* pymt documentation: https://pymt.readthedocs.io
* The pymt source on GitHub: https://github.com/csdms/pymt
 
==CSDMS JupyterHub==
 
[[File:OpenEarthscape logo.png|thumb|The OpenEarthscape logo]]
 
* [[JupyterHub]]
* [[JupyterHubSignUp]] and [[JupyterHubGitHubSignUp]]
* [[JupyterHubUploadDownload]]
 
==Dakota==
 
I've set up a [[Dakota|wiki page]] for all things Dakota.
 
Individual pages:
 
* [[Dakotathon|Dakotathon]] wiki page
* The CSDMS model page for [[Model:Dakotathon|Dakotathon]]
* [[Configuring Dakota on beach]]
* [[Using Dakota on beach]]
* [[Building_Dakota_on_Ubuntu_12.04_LTS|Building Dakota on Ubuntu 12.04 LTS]]
 
There is a tool that is similar in concept to the CSDMS Dakota interface: https://github.com/wisdem/pyDAKOTA,
but it's a bit different in what it provides.
 
==PBS==
 
The Permafrost Benchmark System.
 
* Main page: https://permamodel.github.io/pbs/
* DOI: [https://zenodo.org/record/1410622#.W5GKh379kVw 10.5281/zenodo.1410621]
* [[PbsExecutorSiwenna|PBS executor on siwenna]]
* [[PbsServerDiluvium|PBS server on diluvium]]
* [[PbsClientDiluvium|PBS client on diluvium]]
 
==WMT==


The CSDMS Web Modeling Tool (WMT) can be found at https://csdms.colorado.edu/wmt.
The CSDMS Web Modeling Tool (WMT) can be found at https://csdms.colorado.edu/wmt.


References on the use of WMT:
General information:
 
* The [[CSDMS_Web_Modeling_Tool|CSDMS Web Modeling Tool]]
* The WMT 1.0 release [[WMT_1.0_release|announcement]]
* The WMT 1.1 release [[WMT_1.1_release|announcement]]
 
Using WMT:


* [[WMT_help|WMT Help]]
* [[WMT_help|WMT Help]]
* [[WMT_tutorial|WMT Tutorial]]
* [[WMT_tutorial|WMT Tutorial]]


Source code:
Developer notes for installing and configuring WMT:
 
* [[Installing_a_WMT_executor|Installing a WMT executor]]
** [[TestingExecutorSiwenna|wmt-testing executor on siwenna]]
** [[PermafrostExecutorSiwenna|wmt-permafrost executor on siwenna]]
** [[AnalystExecutorSiwenna|wmt-analyst executor on siwenna]]
** [[HydrologyExecutorSiwenna|wmt-hydrology executor on siwenna]]
** [[TestingExecutorBlanca|wmt-testing executor on blanca]]
** [[PermafrostExecutorBlanca|wmt-permafrost executor on blanca]]
** [[AnalystExecutorBlanca|wmt-analyst executor on blanca]]
** [[HydrologyExecutorBlanca|wmt-hydrology executor on blanca]]
* [[Installing_a_WMT_server|Installing a WMT server]]
** [[PermafrostServerDiluvium|wmt-permafrost server on diluvium]]
** [[AnalystServerDiluvium|wmt-analyst server on diluvium]]
** [[HydrologyServerDiluvium|wmt-hydrology server on diluvium]]
* Installing a WMT client
** [[Build and deploy a WMT client]]
* [[Uncategorized WMT developer notes]]
 
Like Roger Zelazny's Amber, siwenna is the one true site of the WMT executors. All others are but shadows.
 
WMT source code:


* [https://github.com/csdms/wmt-client wmt-client]
* [https://github.com/csdms/wmt-client wmt-client]
* [https://github.com/csdms/wmt wmt-server]
* [https://github.com/csdms/wmt wmt-server]
* [https://github.com/csdms/wmt-exe wmt-executor]
We're using "WMT" and "PyMT", by analogy with NumPy and SciPy (but not Astropy).
Eric and I were thinking earlier that we should use "wMT" and "pyMT" to emphasize that they're modeling tools.
== MediaWiki and the Ask API ==
* Albert has written an [[Web APIs|article]] summarizing all the APIs available on the CSDMS wiki
* Main page navbar entries are here: [[MediaWiki:Sidebar]]
** An idea for a reorg of the menu: [[NewWikiMenu]]
* An [[Querying_the_CSDMS_model_repository|article]] on using the Ask API to access model metadata from the CSDMS wiki
* A [[Examples_of_querying_the_CSDMS_model_repository|table]] of Ask API examples
* An [[Mpiper_member_count_example|example]] of counting and listing all CSDMS members
* I've had to look up how to [https://www.mediawiki.org/wiki/Help:Signatures add a signature] about 10 times already
* [[DeprecatedPageMessage|Text]] I can use on deprecated pages
* A landing page for the CSDMS [[Workbench]], and a page for improving it: [[TmpWorkbench]]
* A landing page for the [[Babelizer]]
== Technology, talks, and tools ==
Software, organizations, discussion groups, etc., that may be useful to CSDMS.
* Pegasus: https://pegasus.isi.edu/
* Popper: http://falsifiable.us/
* RADICAL Cybertools: http://radical-cybertools.github.io/
* OASIS: https://portal.enes.org/oasis
* PEcAn: http://pecanproject.github.io/
* Boulder Earth and Space Science Informatics Group: http://lasp.colorado.edu/home/about/events/bessig/
* Siphon: https://github.com/Unidata/siphon
* Entrofy: https://github.com/dhuppenkothen/entrofy
* Synda: http://prodiguer.github.io/synda
* Binder: https://mybinder.org/
* Colaboratory: https://colab.research.google.com/notebooks/welcome.ipynb?authuser=1
** Mariela's Anuga example: https://colab.research.google.com/notebook#fileId=1fxJ5Piobcfz904lcVvi3n4O5eBjNGuKH
== Other ==
* [[Glossary]] of CSDMS terms
* My own [[Mpiper_sandbox|sandbox]] page
* My [[Mpiper_images|image gallery]]
* [https://jupyter.openearthscape.org jupyter.openearthscape.org] | codename: ''jupyter''
* [https://lab.openearthscape.org lab.openearthscape.org] | codename: ''lab''
* ''jupyter'' : [https://jupyter.openearthscape.org jupyter.openearthscape.org]
* ''lab'' : [https://lab.openearthscape.org lab.openearthscape.org]
''jupyter'' : [https://jupyter.openearthscape.org jupyter.openearthscape.org]
''lab'' : [https://lab.openearthscape.org lab.openearthscape.org]
{|
|-
|
> ''jupyter'' : [https://jupyter.openearthscape.org jupyter.openearthscape.org]
> ''lab'' : [https://lab.openearthscape.org lab.openearthscape.org]
|}
''jupyter'' : [https://jupyter.openearthscape.org jupyter.openearthscape.org]<br>
''lab'' : [https://lab.openearthscape.org lab.openearthscape.org]
: '''''jupyter''''' : [https://jupyter.openearthscape.org jupyter.openearthscape.org]
: '''''lab''''' : [https://lab.openearthscape.org lab.openearthscape.org]
: > ''jupyter'' : [https://jupyter.openearthscape.org jupyter.openearthscape.org]<br>
: > ''lab'' : [https://lab.openearthscape.org lab.openearthscape.org]
; ''jupyter''
: [https://jupyter.openearthscape.org jupyter.openearthscape.org]
; ''lab''
: [https://lab.openearthscape.org lab.openearthscape.org]
{| class="wikitable" style="width: 50%;"
|-
! style="text-align: center; padding: 10px;" | Codename
! URL
|-
| style="text-align: center; padding: 10px;" | ''jupyter''
| https://jupyter.openearthscape.org
|-
| style="text-align: center; padding: 10px;" | ''lab''
| https://lab.openearthscape.org
|}
==Obsolete==
* [[Installing_components_into_a_WMT_executor|Installing components into a WMT executor]]

Latest revision as of 09:45, 23 February 2024




Mark Piper, (he/him/his), website username login: Mpiper

Mp-with-coffee.jpg
Home.png
CSDMS
4001 Discovery Dr.
Boulder, Colorado
80303
United States
Mail.png
mark.piper@colorado.edu
Loading map...

Member of the following CSDMS groups

  • Education and Knowledge Transfer (EKT) Working Group
  • Cyberinformatics and Numerics Working Group

Signed up for the mailing list: yes

Software development and services

EKT projects

BMI and componentization

pymt

pymt is the Python Modeling Toolkit.

CSDMS JupyterHub

The OpenEarthscape logo

Dakota

I've set up a wiki page for all things Dakota.

Individual pages:

There is a tool that is similar in concept to the CSDMS Dakota interface: https://github.com/wisdem/pyDAKOTA, but it's a bit different in what it provides.

PBS

The Permafrost Benchmark System.

WMT

The CSDMS Web Modeling Tool (WMT) can be found at https://csdms.colorado.edu/wmt.

General information:

Using WMT:

Developer notes for installing and configuring WMT:

Like Roger Zelazny's Amber, siwenna is the one true site of the WMT executors. All others are but shadows.

WMT source code:

We're using "WMT" and "PyMT", by analogy with NumPy and SciPy (but not Astropy). Eric and I were thinking earlier that we should use "wMT" and "pyMT" to emphasize that they're modeling tools.

MediaWiki and the Ask API

  • Albert has written an article summarizing all the APIs available on the CSDMS wiki
  • Main page navbar entries are here: MediaWiki:Sidebar
  • An article on using the Ask API to access model metadata from the CSDMS wiki
  • A table of Ask API examples
  • An example of counting and listing all CSDMS members
  • I've had to look up how to add a signature about 10 times already
  • Text I can use on deprecated pages
  • A landing page for the CSDMS Workbench, and a page for improving it: TmpWorkbench
  • A landing page for the Babelizer

Technology, talks, and tools

Software, organizations, discussion groups, etc., that may be useful to CSDMS.

Other


jupyter : jupyter.openearthscape.org
lab : lab.openearthscape.org

> jupyter : jupyter.openearthscape.org
> lab : lab.openearthscape.org

jupyter : jupyter.openearthscape.org
lab : lab.openearthscape.org

jupyter : jupyter.openearthscape.org
lab : lab.openearthscape.org
> jupyter : jupyter.openearthscape.org
> lab : lab.openearthscape.org
jupyter
jupyter.openearthscape.org
lab
lab.openearthscape.org
Codename URL
jupyter https://jupyter.openearthscape.org
lab https://lab.openearthscape.org


Obsolete

Retrieved from "https://csdms.colorado.edu/csdms_wiki/index.php?title=User:Mpiper&oldid=439199"