Model:CarboCAT: Difference between revisions

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{{Model identity
|Model type=Single
}}
{{Start models incorporated}}
{{End a table}}
{{Model identity2
|ModelDomain=Carbonates and Biogenics
|One-line model description=Carbonate cellular automatacyclicity
|Extended model description=CarboCAT uses a cellular automata to model horizontal and vertical distributions of carbonate lithofacies
}}
{{Start model keyword table}}
{{Model keywords
|Model keywords=carbonate lithofacy
}}
{{Model keywords
|Model keywords=cellular automatacyclicity
}}
{{End a table}}
{{Modeler information
{{Modeler information
|First name=Peter  
|First name=Peter
|Last name=Burgess
|Last name=Burgess
|Type of contact=Model developer
|Type of contact=Model developer
|Institute / Organization=Royal Holloway University of London
|Institute / Organization=Shell International E&P
|Town / City=Egham
|Town / City=Rijswijk
|Postal code=TW20 0EX
|Postal code=2288 GS
|State=NO STATE
|Country=Netherlands
|Country=United Kingdom
|Email address=p.burgess@es.rhul.ac.uk
|Email address=p.burgess@es.rhul.ac.uk  
|Phone=+(31) 610 97 3376
}}
{{Model identity
|Categories=Carbonate
|One-line model description=Carbonate cellular automatacyclicity
|Extended model description=CarboCAT uses a cellular automata to model horizontal and vertical distributions of carbonate lithofacies
}}
}}
{{Model technical information
{{Model technical information
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|Start year development=2008
|Start year development=2008
|Does model development still take place?=Yes
|Does model development still take place?=Yes
|DevelopmentCode=Active
|DevelopmentCodeYearChecked=2020
|Model availability=As code
|Model availability=As code
|Source code availability=Through owner
|Source code availability=Through CSDMS repository
|Source csdms web address=https://github.com/csdms-contrib/carbocat
|Program license type=GPL v2
|Program license type=GPL v2
|OpenMI compliant=No but planned
|CCA component=No not possible
|IRF interface=No not possible
|Typical run time=5 minutes
|Typical run time=5 minutes
}}
}}
{{Input - Output description
{{Input - Output description
|Describe input parameters=Production and subsidence rates, cellular automata rules (number of seed neighbours etc), sea-level history  
|Describe input parameters=Production and subsidence rates, cellular automata rules (number of seed neighbours etc), sea-level history
|Input format=ASCII
|Input format=ASCII
|Describe output parameters=Chronostrat plots, maps, cross-sections, lithofacies thickness distributions  
|Describe output parameters=Chronostrat plots, maps, cross-sections, lithofacies thickness distributions
|Output format=ASCII
|Output format=ASCII
|Pre-processing software needed?=No
|Pre-processing software needed?=No
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|Describe processes represented by the model=Subsidence
|Describe processes represented by the model=Subsidence
Depth dependent carbonate production
Depth dependent carbonate production
Lithofacies spatial distribution based on number of neighoubrs of same facies type  
Lithofacies spatial distribution based on number of neighoubrs of same facies type
|Describe key physical parameters and equations=Subsidence rates
|Describe key physical parameters and equations=Subsidence rates
Production rates
Production rates
CA rules, number of seed neighbours etc  
CA rules, number of seed neighbours etc
|Describe length scale and resolution constraints=No intrinsic constraints  
|Describe length scale and resolution constraints=No intrinsic constraints
|Describe time scale and resolution constraints=Short time steps required for accuracy of production rate calculation  
|Describe time scale and resolution constraints=Short time steps required for accuracy of production rate calculation
|Describe any numerical limitations and issues=--
|Describe any numerical limitations and issues=--
}}
}}
{{Model testing
{{Model testing
|Describe available calibration data sets=--
|Describe available test data sets=Burgess (2008)
|Describe available test data sets=Burgess (2008)
|Describe ideal data for testing=Carbonate lithofacies thickness distributions  
|Describe ideal data for testing=Carbonate lithofacies thickness distributions
}}
}}
{{Users groups model
{{Users groups model
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}}
}}
{{Documentation model
{{Documentation model
|Provide key papers on model if any=Burgess (in prep)
|Manual model available=No
|Manual model available=No
}}
}}
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|Comments=--
|Comments=--
}}
}}
{{Infobox Model
{{CSDMS staff part
|model name              = CarboCAT
|OpenMI compliant=No but possible
|developer                = '''Burgess''', Peter
|IRF interface=No but possible
|one-line-description    = Carbonate cellular automatacyclicity   
|CMT component=No but possible
|type                    = Model
|CCA component=No but possible
|source                  = [[image:Red1.png]]
}}
}}
{{Start coupled table}}
{{End a table}}
{{End headertab}}
{{{{PAGENAME}}_autokeywords}}
<!-- Edit the part above to update info on other papers -->
<!-- Edit the part above to update info on other papers -->


== CarboCAT ==
__TOC__
===Introduction===
=== History ===
=== Papers ===
=== CarboCAT Questionnaire ===
==== Contact Information ====
{| class="wikitable"
| class="model_col1"| Model:
| class="model_col2"| CarboCAT
|-
| class="model_col1"| Contact person:
| class="model_col2"| Peter Burgess (Model developer)
|-
| class="model_col1"| Institute:
| class="model_col2"| Royal Holloway University of London
|-
| class="model_col1"| City:
| class="model_col2"|
|-
| class="model_col1"| Country:
| class="model_col2"|
|-
| class="model_col1"| Email:
| class="model_col2"| p.burgess@es.rhul.ac.uk
|-
| class="model_col1"| 2nd person involved:
| class="model_col2"| --
|-
| class="model_col1"| 3rd person involved:
| class="model_col2"| --
|}
==== Model description ====
{| class="wikitable" 
| class="model_col1"| Model type:
| class="model_col2"| Single model for the carbonate domain.
|-
| class="model_col1"| Description:
| class="model_col2"| CarboCAT uses a cellular automata to model horizontal and vertical distributions of carbonate lithofacies
|}
==== Technical information ====
{| class="wikitable" 
| class="model_col1"| Supported platforms:
| class="model_col2"| Windows
|-
| class="model_col1"| Programming language:
| class="model_col2"| Matlab
|-
| class="model_col1"| Model was developed started from:
| class="model_col2"| 2008 and development still takes place
|-
| class="model_col1"| To what degree will the model become available:
| class="model_col2"| As code
|-
| class="model_col1"| Current license type:
| class="model_col2"| GPL v2
|-
| class="model_col1"| Memory requirements:
| class="model_col2"| --
|-
| class="model_col1"| Typical run time:
| class="model_col2"| 5 minutes
|}
==== Input / Output description ====
{| class="wikitable" 
| class="model_col1"| Input parameters:
| class="model_col2"| Production and subsidence rates, cellular automata rules (number of seed neighbours etc), sea-level history
|-
| class="model_col1"| Input format:
| class="model_col2"| ASCII
|-
| class="model_col1"| Output parameters:
| class="model_col2"| Chronostrat plots, maps, cross-sections, lithofacies thickness distributions   
|-
| class="model_col1"| Output format:
| class="model_col2"| ASCII
|-
| class="model_col1"| Post-processing software (if needed):
| class="model_col2"| Yes, Matlab routines
|-
| class="model_col1"| Visualization software (if needed):
| class="model_col2"| Yes, Matlab.
|}
==== Process description ====
{| class="wikitable" 
| class="model_col1"| Processes represented by model:
| class="model_col2"| Subsidence<br>
Depth dependent carbonate production <br>
Lithofacies spatial distribution based on number of neighoubrs of same facies type
|-
| class="model_col1"| Key physical parameters & equations:
| class="model_col2"| Subsidence rates<br>
Production rates<br>
CA rules, number of seed neighbours etc
|-
| class="model_col1"| Length scale & resolution constraints:
| class="model_col2"| No intrinsic constraints
|-
| class="model_col1"| Time scale & resolution constraints:
| class="model_col2"| Short time steps required for accuracy of production rate calculation
|-
| class="model_col1"| Numerical limitations and issues :
| class="model_col2"| --
|}
==== Testing ====
{| class="wikitable" 
| class="model_col1"| Available calibration data sets:
| class="model_col2"| --
|-
| class="model_col1"| Available test data sets:
| class="model_col2"| Burgess (2008)
|-
| class="model_col1"| Ideal data for testing:
| class="model_col2"| Carbonate lithofacies thickness distributions
|}
====User groups ====
{| class="wikitable" 
| class="model_col1"| Currently or plans for collaborating with:
| class="model_col2"| --
|}
==== Documentation ====
{| class="wikitable" 
| class="model_col1"| Key papers of the model:
| class="model_col2"| Burgess (in prep)
|-
| class="model_col1"| Is there a manual available:
| class="model_col2"| No
|-
| class="model_col1"| Model website if any:
| class="model_col2"| --
|}
==== Additional comments ====
{| class="wikitable" 
| class="model_col1"| Comments:
| class="model_col2"| --
|}
=== Issues ===


=== Help ===
==Introduction==


=== Input Files ===
== History ==
Development of the model began in 2005 as an Excel Visual Basic programme. Conversion to Matlab started in 2008. Downloadable version here is still a prototype and requires further testing. Development is ongoing, mostly focussed on development of sediment transport algorithms.


=== Output Files ===
== References  ==
<br>{{AddReferenceUploadButtons}}<br><br>
{{#ifexist:Template:{{PAGENAME}}-citation-indices|{{{{PAGENAME}}-citation-indices}}|}}<br>
{{Include_featured_references_models_cargo}}<br>


=== Download ===
== Issues ==


=== Source ===
== Help ==
Contact [mailto:p.burgess@rhul.ac.uk p.burgess@rhul.ac.uk]


== Input Files ==
The main input file defines parameter values and filenames of several secondary input files. A parameter file example.txt and ll the other files indicated in example.txt are given with the source code and the GUI is set to load this parameter file as a default setting.


[[Category:Carbonate]]
== Output Files ==

Latest revision as of 20:19, 16 September 2020



CarboCAT


Metadata

Also known as
Model type Single
Model part of larger framework
Note on status model
Date note status model
Incorporated models or components:
Spatial dimensions
Spatial extent
Model domain Carbonates and Biogenics
One-line model description Carbonate cellular automatacyclicity
Extended model description CarboCAT uses a cellular automata to model horizontal and vertical distributions of carbonate lithofacies
Keywords:

carbonate lithofacy, cellular automatacyclicity,

Name Peter Burgess
Type of contact Model developer
Institute / Organization Shell International E&P
Postal address 1
Postal address 2
Town / City Rijswijk
Postal code 2288 GS
State
Country Netherlands
Email address p.burgess@es.rhul.ac.uk
Phone +(31) 610 97 3376
Fax


Supported platforms
Windows
Other platform
Programming language

Matlab

Other program language
Code optimized
Multiple processors implemented
Nr of distributed processors
Nr of shared processors
Start year development 2008
Does model development still take place? Yes
If above answer is no, provide end year model development
Code development status Active
When did you indicate the 'code development status'? 2020
Model availability As code
Source code availability
(Or provide future intension) 		Through CSDMS repository
Source web address
Source csdms web address https://github.com/csdms-contrib/carbocat
Program license type GPL v2
Program license type other
Memory requirements
Typical run time 5 minutes


Describe input parameters Production and subsidence rates, cellular automata rules (number of seed neighbours etc), sea-level history
Input format ASCII
Other input format
Describe output parameters Chronostrat plots, maps, cross-sections, lithofacies thickness distributions
Output format ASCII
Other output format
Pre-processing software needed? No
Describe pre-processing software
Post-processing software needed? Yes
Describe post-processing software Yes, Matlab routines
Visualization software needed? Yes
If above answer is yes Matlab
Other visualization software


Describe processes represented by the model Subsidence

Depth dependent carbonate production Lithofacies spatial distribution based on number of neighoubrs of same facies type

Describe key physical parameters and equations Subsidence rates

Production rates CA rules, number of seed neighbours etc

Describe length scale and resolution constraints No intrinsic constraints
Describe time scale and resolution constraints Short time steps required for accuracy of production rate calculation
Describe any numerical limitations and issues --


Describe available calibration data sets
Upload calibration data sets if available:
Describe available test data sets Burgess (2008)
Upload test data sets if available:
Describe ideal data for testing Carbonate lithofacies thickness distributions


Do you have current or future plans for collaborating with other researchers? --
Is there a manual available? No
Upload manual if available:
Model website if any
Model forum / discussion board
Comments --


This part will be filled out by CSDMS staff

OpenMI compliant No but possible
BMI compliant No but possible
WMT component No but possible
PyMT component
Is this a data component
Can be coupled with:
Model info
Authors
Peter Burgess
Source code
Model citations
Nr. of publications: 7
Total citations: 39
h-index: 4
m-quotient: 0.31
QR-code

Link to this page
Other models by author



Introduction

History

Development of the model began in 2005 as an Excel Visual Basic programme. Conversion to Matlab started in 2008. Downloadable version here is still a prototype and requires further testing. Development is ongoing, mostly focussed on development of sediment transport algorithms.

References



Nr. of publications: 7
Total citations: 39
h-index: 4
m-quotient: 0.31



Featured publication(s)YearModel describedType of ReferenceCitations
Burgess, Peter M.; 2013. CarboCAT: A cellular automata model of heterogeneous carbonate strata. Computers &amp; Geosciences, 53, 129–140. 10.1016/j.cageo.2011.08.026
(View/edit entry)		2013 CarboCAT
 Model overview 22
Masiero, Isabella; Kozlowski, Estanislao; Antonatos, Georgios; Xi, Haiwei; Burgess, Peter; 2020. Numerical stratigraphic forward models as conceptual knowledge repositories and experimental tools: An example using a new enhanced version of CarboCAT. Computers &amp; Geosciences, 138, 104453. 10.1016/j.cageo.2020.104453
(View/edit entry)		2020 CarboCAT
 Model overview 4
See more publications of CarboCAT


Issues

Help

Contact p.burgess@rhul.ac.uk

Input Files

The main input file defines parameter values and filenames of several secondary input files. A parameter file example.txt and ll the other files indicated in example.txt are given with the source code and the GUI is set to load this parameter file as a default setting.

Output Files

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