Model:OptimalCycleID

OptimalCycleID

Also known as	Optimal Facies Cycle Identification
Model type	Tool
Model part of larger framework
Note on status model
Date note status model

Incorporated models or components:

Spatial dimensions	1D
Spatial extent	Global
Model domain	Terrestrial, Coastal, Marine
One-line model description	A numerical method to analyse a vertical succession of strata and identify the most cyclical arrangement of constituent facies
Extended model description	A numerical method to analyse a vertical succession of strata and identify the most cyclical arrangement of constituent facies using an optimised transition probability matrix approach

Keywords:	cyclicity, strata, Markov,

Supported platforms	Unix, Linux, Mac OS, Windows
Other platform
Programming language	Matlab
Other program language
Code optimized	Single Processor
Multiple processors implemented
Nr of distributed processors
Nr of shared processors
Start year development	2015
Does model development still take place?	Yes
If above answer is no, provide end year model development
Code development status	Only maintenance
When did you indicate the 'code development status'?	2020
Model availability	As code
Source code availability (Or provide future intension)	Through CSDMS repository
Source web address
Source csdms web address	https://github.com/csdms-contrib/OptimalCycleID
Program license type	GPL v2
Program license type other
Memory requirements
Typical run time	Seconds for fewer than 10 facies classes, a few hours or longer for more than 12 facies classes

Describe input parameters	Two text files are required as input for analysis of each vertical succession of strata in the following formats. Vertical thickness and facies succession: <unit thickness (m)> <facies code (integer)> <unit thickness (m)> <facies code (integer)> ... <unit thickness (m)> <facies code (integer)> EOF e.g. 0.61 9 0.05 5 0.52 1 ... 1.21 3 Facies codes, colour coding and names: <Facies code 1 (integer)> <red (float)> <green (float)> <blue (float)> <facies name (string)> <Facies code 2 (integer)> <red (float)> <green (float)> <blue (float)> <facies name (string)> ... <Facies code n (integer)> <red (float)> <green (float)> <blue (float)> <facies name (string)> e.g. 1 0.55 0.32 0 clay 2 1 0.65 0 silt 3 0.93 0.91 0.8 fineSST 4 1 0.95 0.71 medSST 5 0.81 0.71 0.23 crsSST
Input format	ASCII
Other input format
Describe output parameters	Outputs are plots of the vertical succession input along with a series of transition probability matrices and facies orders indicating the more and less ordered arrangements of facies
Output format	ASCII
Other output format
Pre-processing software needed?	No
Describe pre-processing software
Post-processing software needed?	No
Describe post-processing software
Visualization software needed?	No
If above answer is yes
Other visualization software

Describe processes represented by the model	None, the module analyses strata produced by all depositional processes
Describe key physical parameters and equations
Describe length scale and resolution constraints
Describe time scale and resolution constraints
Describe any numerical limitations and issues

Describe available calibration data sets	One test facies succession CSDMStestSection.txt and one test facies code, colour code and name file CSDMStestSectionLithoCol.txt
Upload calibration data sets if available:	Media:CSDMStestSection.txt, Media:CSDMStestSectionLithoCol.txt
Describe available test data sets
Upload test data sets if available:
Describe ideal data for testing

Do you have current or future plans for collaborating with other researchers?	Yes, collaboration welcome with any interested parties

Is there a manual available?	No
Upload manual if available:
Model website if any
Model forum / discussion board

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Featured reference(s)	Open Access Status	Year	Type of Reference	Cited
Burgess, Peter M.; 2016. Identifying ideal stratigraphic cycles using a quantitative optimization method. Geology, 44443–446. 10.1130/G37827.1	closed	2016	a module overview describing a module	19