Model:OrderID

OrderID

Metadata

Also known as
Model type	Tool
Model part of larger framework
Note on status model
Date note status model

Incorporated models or components:

Spatial dimensions	1D
Spatial extent
Model domain	Terrestrial, Coastal, Marine
One-line model description	A method to test for order in a vertical succession of strata
Extended model description	OrderID is a method that takes thickness and facies data from a vertical succession of strata and tests for the presence of order in the strata

Keywords:	strata, order, sequence stratigraphy,

Name	Peter Burgess
Type of contact	Technical contact
Institute / Organization	Department of Earth Sciences, Royal Holloway University of London
Postal address 1	Egham Hill
Postal address 2
Town / City	Egham
Postal code	TW200EX
State
Country	United Kingdom
Email address	p.burgess@es.rhul.ac.uk
Phone
Fax

Supported platforms	Unix, Linux, Mac OS, Windows
Other platform
Programming language	Matlab
Other program language
Code optimized	Single Processor
Multiple processors implemented
Nr of distributed processors
Nr of shared processors
Start year development	2010
Does model development still take place?	Yes
If above answer is no, provide end year model development
Code development status	Active
When did you indicate the 'code development status'?	2020
Model availability	As code
Source code availability (Or provide future intension)	Through CSDMS repository
Source web address
Source csdms web address	https://github.com/csdms-contrib/orderid
Program license type	MPL
Program license type other
Memory requirements	Depends on dataset being analysed, but should be small, perhaps a few megabytes
Typical run time	Less than one minute

Describe input parameters	Two text files are required as input for analysis of each vertical succession of strata in the following formats. Vertical thickness and facies succession: <unit thickness (m)> <facies code (integer)> <unit thickness (m)> <facies code (integer)> ... <unit thickness (m)> <facies code (integer)> EOF e.g. 0.61 9 0.05 5 0.52 1 ... 1.21 3 Facies codes, colour coding and names: <Facies code 1 (integer)> <red (float)> <green (float)> <blue (float)> <facies name (string)> <Facies code 2 (integer)> <red (float)> <green (float)> <blue (float)> <facies name (string)> ... <Facies code n (integer)> <red (float)> <green (float)> <blue (float)> <facies name (string)> e.g. 1 0.55 0.32 0 clay 2 1 0.65 0 silt 3 0.93 0.91 0.8 fineSST 4 1 0.95 0.71 medSST 5 0.81 0.71 0.23 crsSST
Input format	ASCII
Other input format
Describe output parameters	Outputs are m and r values, plus p values indicating the probability that the calculated m and r values could occur by chance. Graphical output is produced showing the vertical section of strata, a transition probability matrix for the facies, a histogram of facies frequency, a plot of the m value calculated from observed strata versus the m values calculated from Monte Carlo modelling of shuffled equivalent strata, and a plot of the r value calculated from observed strata versus the r values calculated from Monte Carlo modelling of shuffled equivalent strata.
Output format	ASCII
Other output format
Pre-processing software needed?	No
Describe pre-processing software
Post-processing software needed?	No
Describe post-processing software
Visualization software needed?	Yes
If above answer is yes	Matlab
Other visualization software

Describe processes represented by the model	None. Code tests for the presence of order in strata that could arise from allocyclic or autocyclic processes
Describe key physical parameters and equations
Describe length scale and resolution constraints
Describe time scale and resolution constraints
Describe any numerical limitations and issues

Describe available calibration data sets	One test facies succession CSDMStestSection.txt and one test facies code, colour code and name file CSDMStestSectionLithoCol.txt
Upload calibration data sets if available:	Media:CSDMStestSectionLithoCol.txt, Media:CSDMStestSection.txt
Describe available test data sets
Upload test data sets if available:
Describe ideal data for testing

Do you have current or future plans for collaborating with other researchers?	Happy to collaborate with anyone who wants to apply this method, time permitting

Is there a manual available?	No
Upload manual if available:
Model website if any
Model forum / discussion board

Comments	Method is also available as part of the Freeware SedLog package - see http://www.sedlog.com/

This part will be filled out by CSDMS staff

OpenMI compliant	No but possible
BMI compliant	No but possible
WMT component	No but possible
PyMT component
Is this a data component

Can be coupled with:

Model info

Authors

Peter Burgess

Source code

View in CSDMS GitHub repository

Model citations

Nr. of publications:	1
Total citations:	34
h-index:	1
m-quotient:	0.09

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Introduction

History

References

Nr. of publications:	1
Total citations:	34
h-index:	1
m-quotient:	0.09

Featured reference(s)	Open Access Status	Year	Type of Reference	Cited
Burgess, Peter M.; 2016. Identifying Ordered Strata: Evidence, Methods, and Meaning. Journal of Sedimentary Research, 86148–167. 10.2110/jsr.2016.10	closed	2016	a module overview describing a module	34

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Input Files

Output Files