OTIS-Publications

From CSDMS
References OTIS

Publication(s)YearTypeCited
Runkel, R.L. 1998. One-Dimensional Transport With Inflow and Storage (OTIS): A Solute Transport Model For Streams and Rivers. U.S.Geological Survey, Water-Resources Investigation Report 98-4018..
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1998

Model overview

519
Runkel, R.L.; Broshears, R.E. 1991. One-Dimensional Transport with Inflow and Storage (OTIS): A Solute Transport Model for Small Streams. .
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1991

Model overview

75
Martinez, Christopher J; Wise, William R; 2003. Analysis of constructed treatment wetland hydraulics with the transient storage model OTIS. Ecological Engineering, 20, 211–222. 10.1016/S0925-8574(03)00029-6
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2003Model application 67
Morrice, John A.; Valett, H. Maurice; Dahm, Clifford N.; Campana, Michael E.; 1997. Alluvial Characteristics, Groundwater–Surface Water Exchange and Hydrological Retention in Headwater Streams. Hydrological Processes, 11, 253–267. 10.1002/(SICI)1099-1085(19970315)11:33.0.CO;2-J
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1997Model application 324
Runkel, Robert L.; 2002. A new metric for determining the importance of transient storage. Journal of the North American Benthological Society, 21, 529–543. 10.2307/1468428
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2002Model overview 207
Choi, Jungyill; Harvey, Judson W.; Conklin, Martha H.; 2000. Characterizing multiple timescales of stream and storage zone interaction that affect solute fate and transport in streams. Water Resources Research, 36, 1511–1518. 10.1029/2000WR900051
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2000Model application 153
Runkel, Robert L.; McKnight, Diane M.; Andrews, Edmund D.; 1998. Analysis of Transient Storage Subject to Unsteady Flow: Diel Flow Variation in an Antarctic Stream. Journal of the North American Benthological Society, 17, 143–154. 10.2307/1467958
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1998Model application 124
Laenen, Antonius; Bencala, Kenneth E.; 2001. TRANSIENT STORAGE ASSESSMENTS OF DYE-TRACER INJECTIONS IN RIVERS OF THE WILLAMETTE BASIN, OREGON. Journal of the American Water Resources Association, 37, 367–377. 10.1111/j.1752-1688.2001.tb00975.x
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2001Model application 58
De Smedt, F.; Brevis, W.; Debels, P.; 2005. Analytical solution for solute transport resulting from instantaneous injection in streams with transient storage. Journal of Hydrology, 315, 25–39. 10.1016/j.jhydrol.2005.04.002
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2005Model application 76
Harvey, Judson W.; Saiers, James E.; Newlin, Jessica T.; 2005. Solute transport and storage mechanisms in wetlands of the Everglades, south Florida: SOLUTE TRANSPORT AND STORAGE IN WETLANDS. Water Resources Research, 41, . 10.1029/2004WR003507
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2005Model application 107
Choi, J.; Harvey, J.W.; Conklin, M.H. 1999. Use of multi-parameter sensitivity analysis to determine relative importance of factors influencing natural attenuation of mining contaminants. .
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1999

Model overview

29
Fernald, Alexander G.; Wigington, P. J.; Landers, Dixon H.; 2001. Transient storage and hyporheic flow along the Willamette River, Oregon: Field measurements and model estimates. Water Resources Research, 37, 1681–1694. 10.1029/2000WR900338
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2001Model application 118
Gooseff, Michael N.; McKnight, Diane M.; Runkel, Robert L.; Duff, John H.; 2004. Denitrification and hydrologic transient storage in a glacial meltwater stream, McMurdo Dry Valleys, Antarctica. Limnology and Oceanography, 49, 1884–1895. 10.4319/lo.2004.49.5.1884
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2004Model application 107
Scott, Durelle T.; Gooseff, Michael N.; Bencala, Kenneth E.; Runkel, Robert L.; 2003. Automated calibration of a stream solute transport model: implications for interpretation of biogeochemical parameters. Journal of the North American Benthological Society, 22, 492–510. 10.2307/1468348
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2003Model application 63
Battin, Tom J.; Kaplan, Louis A.; Denis Newbold, J.; Hansen, Claude M. E.; 2003. Contributions of microbial biofilms to ecosystem processes in stream mesocosms. Nature, 426, 439–442. 10.1038/nature02152
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2003Model application 584
Wagener, Thorsten; Camacho, Luis A.; Wheater, Howard S.; 2002. Dynamic identifiability analysis of the transient storage model for solute transport in rivers. Journal of Hydroinformatics, 4, 199–211. 10.2166/hydro.2002.0019
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2002Model application 48
Stofleth, John M.; Shields Jr, F. Douglas; Fox, Garey A.; 2008. Hyporheic and total transient storage in small, sand-bed streams. Hydrological Processes, 22, 1885–1894. 10.1002/hyp.6773
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2008Model application 82
Lin, Yi-Chang; Medina, Miguel A.; 2003. Incorporating transient storage in conjunctive stream–aquifer modeling. Advances in Water Resources, 26, 1001–1019. 10.1016/S0309-1708(03)00081-2
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2003

Model application

44
Gooseff, Michael N.; Wondzell, Steve M.; Haggerty, Roy; Anderson, Justin; 2003. Comparing transient storage modeling and residence time distribution (RTD) analysis in geomorphically varied reaches in the Lookout Creek basin, Oregon, USA. Advances in Water Resources, 26, 925–937. 10.1016/S0309-1708(03)00105-2
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2003Model application 152
Lautz, Laura K.; Siegel, Donald I.; Bauer, Robert L.; 2006. Impact of debris dams on hyporheic interaction along a semi-arid stream. Hydrological Processes, 20, 183–196. 10.1002/hyp.5910
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2006Model application 131
Runkel, Robert L.; 2007. Toward a transport-based analysis of nutrient spiraling and uptake in streams: Transport-based analysis of spiraling. Limnology and Oceanography: Methods, 5, 50–62. 10.4319/lom.2007.5.50
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2007Model application 105
Keefe, Steffanie H.; Barber, Larry B.; Runkel, Robert L.; Ryan, Joseph N.; McKnight, Diane M.; Wass, Roland D.; 2004. Conservative and reactive solute transport in constructed wetlands: SOLUTE TRANSPORT IN CONSTRUCTED WETLANDS. Water Resources Research, 40, . 10.1029/2003WR002130
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2004Model application 105
McKnight, Diane M.; Hornberger, George M.; Bencala, Kenneth E.; Boyer, Elizabeth W.; 2002. In-stream sorption of fulvic acid in an acidic stream: A stream-scale transport experiment: IN-STREAM SORPTION OF FULVIC ACID. Water Resources Research, 38, 6–1-6-12. 10.1029/2001WR000269
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2002Model application 63
De Smedt, F.; 2006. Analytical solutions for transport of decaying solutes in rivers with transient storage. Journal of Hydrology, 330, 672–680. 10.1016/j.jhydrol.2006.04.042
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2006Model application 46
Ensign, Scott H.; Doyle, Martin W.; 2005. In-channel transient storage and associated nutrient retention: Evidence from experimental manipulations. Limnology and Oceanography, 50, 1740–1751. 10.4319/lo.2005.50.6.1740
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2005Model application 167
Fellows, Christine S.; Valett, Maurice H.; Dahm, Clifford N.; 2001. Wholeߚstream metabolism in two montane streams: Contribution of the hyporheic zone. Limnology and Oceanography, 46, 523–531. 10.4319/lo.2001.46.3.0523
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2001Model application 193
Ryan, Robert J.; Packman, Aaron I.; Welty, Claire; 2004. Estimation of solute transport and storage parameters in a stream with anthropogenically produced unsteady flow and industrial bromide input: TECHNICAL NOTE. Water Resources Research, 40, . 10.1029/2003WR002458
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2004Model application 16
Jin, Li; Siegel, Donald I.; Lautz, Laura K.; Otz, Martin H.; 2009. Transient storage and downstream solute transport in nested stream reaches affected by beaver dams. Hydrological Processes, 23, 2438–2449. 10.1002/hyp.7359
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2009Model application 43
Lees, Matthew J.; Camacho, Luis A.; Chapra, Steven; 2000. On the relationship of transient storage and aggregated dead zone models of longitudinal solute transport in streams. Water Resources Research, 36, 213–224. 10.1029/1999WR900265
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2000Model application 77
Harvey, Judson W.; Fuller, Christopher C.; 1998. Effect of enhanced manganese oxidation in the hyporheic zone on basin-scale geochemical mass balance. Water Resources Research, 34, 623–636. 10.1029/97WR03606
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1998Model application 274
Gooseff, Michael N.; Bencala, Kenneth E.; Scott, Durelle T.; Runkel, Robert L.; McKnight, Diane M.; 2005. Sensitivity analysis of conservative and reactive stream transient storage models applied to field data from multiple-reach experiments. Advances in Water Resources, 28, 479–492. 10.1016/j.advwatres.2004.11.012
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2005Model application 52
Wondzell, Steven M.; 2006. Effect of morphology and discharge on hyporheic exchange flows in two small streams in the Cascade Mountains of Oregon, USA. Hydrological Processes, 20, 267–287. 10.1002/hyp.5902
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2006Model application 198
Bernot, Melody J.; Tank, Jennifer L.; Royer, Todd V.; David, Mark B.; 2006. Nutrient uptake in streams draining agricultural catchments of the midwestern United States. Freshwater Biology, 51, 499–509. 10.1111/j.1365-2427.2006.01508.x
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2006Model application 199
Tate, Cathy M.; Broshears, Robert E.; McKnight, Diane M.; 1995. Phosphate dynamics in an acidic mountain stream: Interactions involving algal uptake, sorption by iron oxide, and photoreduction. Limnology and Oceanography, 40, 938–946. 10.4319/lo.1995.40.5.0938
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1995Model application 81
Kelleher, C.; Wagener, T.; McGlynn, B.; Ward, A. S.; Gooseff, M. N.; Payn, R. A.; 2013. Identifiability of transient storage model parameters along a mountain stream: TSM IDENTIFIABILITY FOR A MOUNTAIN STREAM. Water Resources Research, 49, 5290–5306. 10.1002/wrcr.20413
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2013Model application 65
Stang, Christoph; Wieczorek, Matthias Valentin; Noss, Christian; Lorke, Andreas; Scherr, Frank; Goerlitz, Gerhard; Schulz, Ralf; 2014. Role of submerged vegetation in the retention processes of three plant protection products in flow-through stream mesocosms. Chemosphere, 107, 13–22. 10.1016/j.chemosphere.2014.02.055
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2014Model application 15
Dewaide, Lorraine; Bonniver, Isabelle; Rochez, Gaëtan; Hallet, Vincent; 2016. Solute transport in heterogeneous karst systems: Dimensioning and estimation of the transport parameters via multi-sampling tracer-tests modelling using the OTIS (One-dimensional Transport with Inflow and Storage) program. Journal of Hydrology, 534, 567–578. 10.1016/j.jhydrol.2016.01.049
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2016Model application 28
Liu, Jun Jie; Dong, Bin; Guo, Chang Qiang; Liu, Fang Ping; Brown, Larry; Li, Qiang; 2016. Variations of effective volume and removal rate under different water levels of constructed wetland. Ecological Engineering, 95, 652–664. 10.1016/j.ecoleng.2016.06.122
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2016Model application 20
Anderman, Evan R.; Hill, Mary C.; Poeter, Eileen P.; 1996. Two-Dimensional Advective Transport in Ground-Water Flow Parameter Estimation. Ground Water, 34, 1001–1009. 10.1111/j.1745-6584.1996.tb02165.x
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1996Model application 82
Tych, W.; Young, P.C.; 2012. A Matlab software framework for dynamic model emulation. Environmental Modelling & Software, 34, 19–29. 10.1016/j.envsoft.2011.08.008
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2012Model application 16
Argerich, Alba; Martí, Eugènia; Sabater, Francesc; Ribot, Miquel; von Schiller, Daniel; Riera, Joan L.; 2008. Combined effects of leaf litter inputs and a flood on nutrient retention in a Mediterranean mountain stream during fall. Limnology and Oceanography, 53, 631–641. 10.4319/lo.2008.53.2.0631
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2008Model application 50
Lautz, Laura K.; Siegel, Donald I.; 2007. The effect of transient storage on nitrate uptake lengths in streams: an inter-site comparison. Hydrological Processes, 21, 3533–3548. 10.1002/hyp.6569
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2007Model application 70
Shultz, Christopher D.; Bailey, Ryan T.; Gates, Timothy K.; Heesemann, Brent E.; Morway, Eric D.; 2018. Simulating selenium and nitrogen fate and transport in coupled stream-aquifer systems of irrigated regions. Journal of Hydrology, 560, 512–529. 10.1016/j.jhydrol.2018.02.027
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2018Model application 17
Argerich, Alba; Martí, Eugènia; Sabater, Francesc; Haggerty, Roy; Ribot, Miquel; 2011. Influence of transient storage on stream nutrient uptake based on substrata manipulation. Aquatic Sciences, 73, 365–376. 10.1007/s00027-011-0184-9
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2011Model application 33
Femeena, P.V.; Chaubey, I.; Aubeneau, A.; McMillan, S.K.; Wagner, P.D.; Fohrer, N.; 2020. Developing an improved user interface for a physically-based stream solute transport model. Environmental Modelling & Software, 129, 104715. 10.1016/j.envsoft.2020.104715
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2020Model application 2
Choi, J; Hulseapple, S.M; Conklin, M.H; Harvey, J.W; 1998. Modeling CO2 degassing and pH in a stream–aquifer system. Journal of Hydrology, 209, 297–310. 10.1016/S0022-1694(98)00093-6
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1998Model application 67
Kazezyılmaz-Alhan, Cevza Melek; Medina, Miguel A.; 2006. Stream solute transport incorporating hyporheic zone processes. Journal of Hydrology, 329, 26–38. 10.1016/j.jhydrol.2006.02.003
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2006Model application 33
Wlostowski, Adam N.; Gooseff, Michael N.; Wagener, Thorsten; 2013. Influence of constant rate versus slug injection experiment type on parameter identifiability in a 1-D transient storage model for stream solute transport: Technical Note. Water Resources Research, 49, 1184–1188. 10.1002/wrcr.20103
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2013Model application 20
Oparin, M. L.; Kondratenkov, I. A.; Oparina, O. S.; Mamayev, A. B.; Tikhomirova, E. I.; 2017. Statistical Analysis of the Influence of a Disturbance Factor on Formation of the Spatial Structure of the Great Bustard (Otis tarda L.) (Otididae, Aves) Population in the Trans-Volga Region. Biology Bulletin, 44, 1289–1294. 10.1134/S1062359017100090
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2017Model application 0
Garneau, Cyril; Sauvage, S.; Probst, A.; Sánchez-Pérez, J.M.; 2015. Modelling of trace metal transfer in a large river under different hydrological conditions (the Garonne River in southwest France). Ecological Modelling, 306, 195–204. 10.1016/j.ecolmodel.2014.09.011
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2015Model application 14
Liu, Feng; Wu, Jian; 2014. Predicting organic topological materials. National Science Review, 1, 32–32. 10.1093/nsr/nwt011
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2014Model application 2
Becker, Joseph F.; Endreny, Theodore A.; Robinson, Jesse D.; 2013. Natural channel design impacts on reach-scale transient storage. Ecological Engineering, 57, 380–392. 10.1016/j.ecoleng.2013.04.051
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2013Model application 21
Claessens, Luc; Tague, Christina L.; 2009. Transport-based method for estimating in-stream nitrogen uptake at ambient concentration from nutrient addition experiments: Stream N uptake at ambient concentration. Limnology and Oceanography: Methods, 7, 811–822. 10.4319/lom.2009.7.811
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2009Model application 20
Shultz, Christopher D.; Gates, Timothy K.; Bailey, Ryan T.; 2018. Evaluating best management practices to lower selenium and nitrate in groundwater and streams in an irrigated river valley using a calibrated fate and reactive transport model. Journal of Hydrology, 566, 299–312. 10.1016/j.jhydrol.2018.09.005
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2018Model application 12
Herrman, Kyle S.; Bouchard, Virginie; Granata, Tim; Carey, Anne E.; Moore, Richard H.; 2009. The effect of riparian land use on transport hydraulics in agricultural headwater streams located in northeast Ohio, USA. Hydrological Processes, , n/a–n/a. 10.1002/hyp.7489
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2009Model application 5
Drummond, Jennifer D.; Bernal, Susana; von Schiller, Daniel; Martí, Eugènia; 2016. Linking in-stream nutrient uptake to hydrologic retention in two headwater streams. Freshwater Science, 35, 1176–1188. 10.1086/688599
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2016Model application 21
Rivord, Jeremy; Saito, Laurel; Miller, Glenn; Stoddard, Shawn S.; 2014. Modeling Contaminant Spills in the Truckee River in the Western United States. Journal of Water Resources Planning and Management, 140, 343–354. 10.1061/(ASCE)WR.1943-5452.0000338
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2014Model application 10
Zhou, Yan; Wilson, G. V.; Fox, G.A.; Rigby, J.R.; Dabney, S.M.; 2016. Soil pipe flow tracer experiments: 2. Application of a streamflow transient storage zone model: Transient Storage Model for Soil Pipes. Hydrological Processes, 30, 1280–1291. 10.1002/hyp.10712
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2016Model application 10
Lee, Roger W.; Bennett, Phillip C.; 1998. Reductive Dissolution and Reactive Solute Transport in a Sewage-Contaminated Glacial Outwash Aquifer. Ground Water, 36, 583–595. 10.1111/j.1745-6584.1998.tb02832.x
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1998Model application 17
Hastings Puckett, Mary; Zhang, Yong; Lu, Bingqing; Lu, YueHan; Sun, HongGuang; Zheng, Chunmiao; Wei, Wei; 2019. Application of fractional differential equation to interpret the dynamics of dissolved heavy-metal uptake in streams at a wide range of scales. The European Physical Journal Plus, 134, 377. 10.1140/epjp/i2019-12897-1
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2019Model application 5
Gooseff, Michael N.; Mcknight, Diane M.; Runkel, Robert L.; 2004. Reach-Scale Cation Exchange Controls on Major Ion Chemistry of an Antarctic Glacial Meltwater Stream. Aquatic Geochemistry, 10, 221–238. 10.1007/s10498-004-2260-4
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2004Model application 22
Knust, Andrew E.; Warwick, John J.; 2009. Using a fluctuating tracer to estimate hyporheic exchange in restored and unrestored reaches of the Truckee River, Nevada, USA. Hydrological Processes, 23, 1119–1130. 10.1002/hyp.7218
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2009Model application 24
Booman, Gisel C.; Laterra, Pedro; 2019. Channelizing Streams for Agricultural Drainage Impairs their Nutrient Removal Capacity. Journal of Environmental Quality, 48, 459–468. 10.2134/jeq2018.07.0264
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2019Model application 4
Morris, J.; Ingenito, E.P.; Mark, L.; Kamm, R.D.; Johnson, M.; 1999. Effect of high levels of film compression on surfactant transport. . Volume 1.
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1999Model application 0
Araújo, Adérito; Sousa, Ercília; Albuquerque, António; 2008. Longitudinal dispersion in a horizontal subsurface flow constructed wetland: a numerical solution. ANZIAM Journal, 50, 339. 10.21914/anziamj.v50i0.1367
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2008Model application 5
Gladwell, G. M. L.; Moon, Francis C.; Feng, Z. C.; Poon, Chisang; 1999. A Mathematical Model of Pendelluft Flow in a Single Airway Bifurcation. In: (eds.)IUTAM Symposium on New Applications of Nonlinear and Chaotic Dynamics in Mechanics.. 503–504.
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1999Model application 0
Tinet, Anne-Julie; Collon, Pauline; Philippe, Camille; Dewaide, Lorraine; Hallet, Vincent; 2019. OM-MADE: An open-source program to simulate one-dimensional solute transport in multiple exchanging conduits and storage zones. Computers & Geosciences, 127, 23–35. 10.1016/j.cageo.2019.03.001
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2019Model application 8
Abboushi, Atta M. E.; Almasri, Mohammad N.; Shadeed, Sameer M.; 2015. A preliminary investigation of wadi–aquifer interaction in the semi-arid watershed of Faria, Palestine using tracer-based methodology. Environmental Earth Sciences, 73, 7861–7872. 10.1007/s12665-014-3944-8
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2015Model application 4
Li, Ruzhong; Wang, Yuqing; Qian, Jing; Fu, Yang; 2020. Evaluating transient storage and associated nutrient retention in a nutrient-rich headwater stream: a case study in Lake Chaohu Basin, China. Environmental Science and Pollution Research, 27, 6066–6077. 10.1007/s11356-019-07349-3
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2020Model application 2
Stofleth, John M.; Shields, Jr., F. Douglas; Fox, Garey A.; 2005. Hyporheic and Total Storage Exchange in Small Sand-Bed Streams. . Volume .
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2005Model application 4
Ostendorf, D. W.; 1986. Modeling Contamination of Shallow Unconfined Aquifers Through Infiltration Beds. Water Resources Research, 22, 375–382. 10.1029/WR022i003p00375
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1986Model application 6
Davenport, Eric; Ross, Matt; Price, Jennifer Mueller; 2013. Characterizing Transient Storage and Nitrate Uptake for Pre-restoration Monitoring of Lost Creek. . Volume .
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2013Model application 0
Ding, Yan; Cui, Kangping; Lv, Kai; Li, Ruzhong; Chen, Yihan; Liu, Xiaowei; 2020. Revealing the hydrological transport and attenuation of 14 antibiotics in a low-flow stream. Science of The Total Environment, , 143288. 10.1016/j.scitotenv.2020.143288
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2020Model application 0
, ; 2020. QUANTIFYING TRANSIENT STORAGE IN REALIGNED AND NON-REALIGNED RIVER REACHES.. , , . 10.24377/LJMU.T.00013105
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2020Model application 0
Zięba, Damian; Wachniew, Przemysław; 2021. Phosphorus Transport in a Lowland Stream Derived from a Tracer Test with 32P. Water, 13, 1030. 10.3390/w13081030
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2021Model application 0
Tang, Yuchen; Foppen, Jan Willem; Bogaard, Thom A.; 2021. Transport of silica encapsulated DNA microparticles in controlled instantaneous injection open channel experiments. Journal of Contaminant Hydrology, 242, 103880. 10.1016/j.jconhyd.2021.103880
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2021Model application 0
Wei, Song; Lu, YueHan; Chen, Shuo; Shang, Peng; Xia, Yuan; Zhang, Yong; 2021. Fractional-derivative model simulations of reach-scale uptake and transport dynamics of natural fluorescent dissolved organic matter in a temperate forested stream in southeastern U.S.. Journal of Hydrology, 603, 126878. 10.1016/j.jhydrol.2021.126878
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2021Model application 0
Valappil, Femeena Pandara; 2019. IMPROVING NUTRIENT TRANSPORT SIMULATION IN SWAT BY DEVELOPING A REACH-SCALE WATER QUALITY MODEL. , , 1880076 Bytes. 10.25394/PGS.8133323.V1
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2019Model application 0
Marttila, H.; Tammela, S.; Mustonen, K.-R.; Louhi, P.; Muotka, T.; Mykrä, H.; Kløve, B.; 2019. Contribution of flow conditions and sand addition on hyporheic zone exchange in gravel beds. Hydrology Research, 50, 878–885. 10.2166/nh.2019.099
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2019

Model application

2
Ward, Adam S.; Kelleher, Christa A.; Mason, Seth J. K.; Wagener, Thorsten; McIntyre, Neil; McGlynn, Brian; Runkel, Robert L.; Payn, Robert A.; 2017. A software tool to assess uncertainty in transient-storage model parameters using Monte Carlo simulations. Freshwater Science, 36, 195–217. 10.1086/690444
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2017

Model application

19
Walton-Day, Katherine; Runkel, Robert L.; Kimball, Briant A.; 2012. Using Spatially Detailed Water-Quality Data and Solute-Transport Modeling to Support Total Maximum Daily Load Development 1: Using Spatially Detailed Water-Quality Data and Solute-Transport Modeling to Support Total Maximum Daily Load Development. JAWRA Journal of the American Water Resources Association, 48, 949–969. 10.1111/j.1752-1688.2012.00662.x
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2012

Model application

11
Brown, Aaron M.L.; Robertson, Iain; Walsh, Rory P.D.; Byrne, Patrick; Edwards, Paul; Williams, Tom; De-Quincey, Heather; 2020. Tracing Heavy Metals at Nantymwyn, Wales. .
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2020

Model application

0
Runkel, R.; 2000. Using OTIS to Model Solute Transport in Streams and Rivers. In: (eds.)US Department of the Interior, US Geological Survey.. .
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2000

Model application

20
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Nr. of publications: 83
Total citations: 5473
h-index: 37
m-quotient: 1.0

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