Model:BOM: Difference between revisions

From CSDMS
(Created page with "{{Model identity}} {{Start models incorporated}} {{End a table}} {{Model identity2 |Categories=Coastal, Marine |Spatial dimensions=2D, 3D |Spatialscale=Continental |One-line mode...")
 
m (Text replacement - "{{End headertab}}" to "{{End headertab}} {{{{PAGENAME}}_autokeywords}}")
 
(16 intermediate revisions by 2 users not shown)
Line 1: Line 1:
{{Model identity}}
{{Model identity
|Model type=Single
}}
{{Start models incorporated}}
{{Start models incorporated}}
{{End a table}}
{{End a table}}
{{Model identity2
{{Model identity2
|Categories=Coastal, Marine
|ModelDomain=Coastal, Marine
|Spatial dimensions=2D, 3D
|Spatial dimensions=1D, 2D, 3D
|Spatialscale=Continental
|Spatialscale=Continental, Regional-Scale, Landscape-Scale, Watershed-Scale, Reach-Scale, Patch-Scale, Grain-Scale
|One-line model description=Bergen Ocean Model
|One-line model description=Bergen Ocean Model
|Extended model description=A three-dimensional hydrodynamic multi-purpose model for coastal and shelf seas, which is coupled to biological, resuspension and contaminant models, and resolves mesoscale to seasonal scale processes.  
|Extended model description=A three-dimensional hydrodynamic multi-purpose model for coastal and shelf seas, which can be coupled to biological, re-suspension and contaminant models. Has been used in a variety of configurations from resolving grain-scale up to seasonal scale processes. Can be run with optional MPI parallelization or run-time visualization via PGPLOT. Programmed with the goal that the same executable can be used for all cases, by using allocatable arrays and cases defined via a single configuration file pointing to input data in files typically in the same directory.
}}
}}
{{Start model keyword table}}
{{Start model keyword table}}
Line 19: Line 21:
|Type of contact=Technical contact
|Type of contact=Technical contact
|Institute / Organization=University of Bergen
|Institute / Organization=University of Bergen
|Postal address 1=Johannes Bruns gt. 12  
|Postal address 1=Johannes Bruns gt. 12
|Town / City=Bergen
|Town / City=Bergen
|Postal code=N-5008
|Postal code=N-5008
|State=NO STATE
|Country=Norway
|Country=Norway
|Email address=Jarle.Berntsen@mi.uib.no
|Email address=Jarle.Berntsen@mi.uib.no
|Phone=(+47) 55 58 48 54
|Phone=(+47) 55 58 48 54
|Fax=(+47) 55 58 96 72
|Fax=(+47) 55 58 96 72
}}
{{Additional modeler information
|Additional first name=Helge
|Additional last name=Avlesen
|Additional type of contact=Model developer
|Additional institute / Organization=NORCE Norwegian Research Centre
|Additional country=Norway
|Additional email address=heav@norceresearch.no
}}
}}
{{Model technical information
{{Model technical information
|Supported platforms=Unix, Linux, Mac OS
|Supported platforms=Unix, Linux, Mac OS, Windows
|Other program language=Fortran95
|Other program language=Fortran95
|Code optimized=Single Processor
|Code optimized=Single Processor, Multiple Processors
|Multiple processors implemented=Distributed memory
|Start year development=1995
|Start year development=1995
|Does model development still take place?=Yes
|Does model development still take place?=Yes
|DevelopmentCode=Only maintenance
|DevelopmentCodeYearChecked=2020
|Model availability=As code
|Source code availability=Through web repository
|Source code availability=Through web repository
|Source web address=http://www.mi.uib.no/BOM/
|Source web address=https://org.uib.no/bom/
|Program license type=Other
|Program license type=Other
}}
}}
{{Input - Output description
{{Input - Output description
|Pre-processing software needed?=No
|Describe input parameters=Wind, rivers, submerged inlets, lateral open boundaries, surface heat flux, a limited number of numerical schemes can be chosen, ...
|Post-processing software needed?=No
|Input format=ASCII, Binary
|Visualization software needed?=No
|Describe output parameters=Currents, salinity, temperature, ... all model variables.
|Output format=ASCII, Binary
|Pre-processing software needed?=Yes
|Describe pre-processing software=idealized experiments can be run with simple text files as input, but for realistic cases input data needs to be created with e.g. python, matlab or fortran scripts.
|Post-processing software needed?=Yes
|Describe post-processing software=model supports a variety of output to ascii or binary files that relatively easy can be read into e.g. matlab or python plotting packages. Gnuplot as also been used.
|Visualization software needed?=Yes
|If above answer is yes=Matlab
|Other visualization software=Python matplotlib, Gnuplot, etc.
}}
{{Process description model
|Describe processes represented by the model=Free surface flow of water. Conservation of heat, salinity, mass, turbulent kinetic energy, dissipation.
|Describe key physical parameters and equations=Current speed, temperature, salinity, sea surface elevation, wind speed, river fluxes.
Based on Navier Stokes equations, Boussinesq approximation, terrain following coordinates (sigma)
|Describe length scale and resolution constraints=Uniform horisontal resolution, i.e. works best for resolutions < 20km.
|Describe time scale and resolution constraints=No assimilation means it works best for simulations shorter than ~6months unless boundary conditions are carefully tuned to avoid model drift.
|Describe any numerical limitations and issues=Free surface formulation does not support rapid changes in water elevation like hydraulic jumps in rivers.
}}
}}
{{Process description model}}
{{Model testing}}
{{Model testing}}
{{Users groups model}}
{{Users groups model}}
{{Documentation model
{{Documentation model
|Manual model available=Yes
|Manual model available=Yes
|Model manual=USERS GUIDE for a  modesplit sigma-coordinate numerical ocean model.pdf,  
|Model manual=USERS GUIDE for a  modesplit sigma-coordinate numerical ocean model.pdf,
|Model website if any=org.uib.no/bom
}}
}}
{{Additional comments model}}
{{Additional comments model}}
{{CSDMS staff part
{{CSDMS staff part
|OpenMI compliant=No not possible
|OpenMI compliant=No but possible
|CCA component=No not possible
|IRF interface=No but possible
|IRF interface=No not possible
|CMT component=No but possible
|CMT component=Not yet
|CCA component=No but possible
}}
}}
{{Start coupled table}}
{{Start coupled table}}
{{End a table}}
{{End a table}}
{{End headertab}}
{{End headertab}}
{{{{PAGENAME}}_autokeywords}}
<!-- PLEASE USE THE "EDIT WITH FORM" BUTTON TO EDIT ABOVE CONTENTS; CONTINUE TO EDIT BELOW THIS LINE -->
<!-- PLEASE USE THE "EDIT WITH FORM" BUTTON TO EDIT ABOVE CONTENTS; CONTINUE TO EDIT BELOW THIS LINE -->
{{#ifexist:Template:{{#sub:{{PAGENAME}}|0|1}}{{#sub:{{lc:{{PAGENAME}}}}|1}} download stats | ==Download statistics==
 
{{{{#sub:{{PAGENAME}}|0|1}}{{#sub:{{lc:{{PAGENAME}}}}|1}} download stats}} | }}


==Introduction==
==Introduction==
Line 68: Line 98:
== History ==
== History ==


== Papers ==
== References  ==
<br>{{AddReferenceUploadButtons}}<br><br>
{{#ifexist:Template:{{PAGENAME}}-citation-indices|{{{{PAGENAME}}-citation-indices}}|}}<br>
{{Include_featured_references_models_cargo}}<br>


== Issues ==
== Issues ==


== Help ==
== Help ==
{{#ifexist:Model_help:{{PAGENAME}}|[[Model_help:{{PAGENAME}}]]|}}


== Input Files ==
== Input Files ==


== Output Files ==
== Output Files ==
== Download source code ==

Latest revision as of 20:16, 16 September 2020



BOM


Metadata

Also known as
Model type Single
Model part of larger framework
Note on status model
Date note status model
Incorporated models or components:
Spatial dimensions 1D, 2D, 3D
Spatial extent Continental, Regional-Scale, Landscape-Scale, Watershed-Scale, Reach-Scale, Patch-Scale, Grain-Scale
Model domain Coastal, Marine
One-line model description Bergen Ocean Model
Extended model description A three-dimensional hydrodynamic multi-purpose model for coastal and shelf seas, which can be coupled to biological, re-suspension and contaminant models. Has been used in a variety of configurations from resolving grain-scale up to seasonal scale processes. Can be run with optional MPI parallelization or run-time visualization via PGPLOT. Programmed with the goal that the same executable can be used for all cases, by using allocatable arrays and cases defined via a single configuration file pointing to input data in files typically in the same directory.
Keywords:

hydrodynamics,

Name Jarle Berntsen
Type of contact Technical contact
Institute / Organization University of Bergen
Postal address 1 Johannes Bruns gt. 12
Postal address 2
Town / City Bergen
Postal code N-5008
State
Country Norway
Email address Jarle.Berntsen@mi.uib.no
Phone (+47) 55 58 48 54
Fax (+47) 55 58 96 72


Name Helge Avlesen
Type of contact Model developer
Institute / Organization NORCE Norwegian Research Centre
Postal address 1
Postal address 2
Town / City
Postal code
State
Country Norway
Email address heav@norceresearch.no
Phone
Fax


Supported platforms
Unix, Linux, Mac OS, Windows
Other platform
Programming language

Other program language Fortran95
Code optimized Single Processor, Multiple Processors
Multiple processors implemented Distributed memory
Nr of distributed processors
Nr of shared processors
Start year development 1995
Does model development still take place? Yes
If above answer is no, provide end year model development
Code development status Only maintenance
When did you indicate the 'code development status'? 2020
Model availability As code
Source code availability
(Or provide future intension)
Through web repository
Source web address https://org.uib.no/bom/
Source csdms web address
Program license type Other
Program license type other
Memory requirements
Typical run time


Describe input parameters Wind, rivers, submerged inlets, lateral open boundaries, surface heat flux, a limited number of numerical schemes can be chosen, ...
Input format ASCII, Binary
Other input format
Describe output parameters Currents, salinity, temperature, ... all model variables.
Output format ASCII, Binary
Other output format
Pre-processing software needed? Yes
Describe pre-processing software idealized experiments can be run with simple text files as input, but for realistic cases input data needs to be created with e.g. python, matlab or fortran scripts.
Post-processing software needed? Yes
Describe post-processing software model supports a variety of output to ascii or binary files that relatively easy can be read into e.g. matlab or python plotting packages. Gnuplot as also been used.
Visualization software needed? Yes
If above answer is yes Matlab
Other visualization software Python matplotlib, Gnuplot, etc.


Describe processes represented by the model Free surface flow of water. Conservation of heat, salinity, mass, turbulent kinetic energy, dissipation.
Describe key physical parameters and equations Current speed, temperature, salinity, sea surface elevation, wind speed, river fluxes.

Based on Navier Stokes equations, Boussinesq approximation, terrain following coordinates (sigma)

Describe length scale and resolution constraints Uniform horisontal resolution, i.e. works best for resolutions < 20km.
Describe time scale and resolution constraints No assimilation means it works best for simulations shorter than ~6months unless boundary conditions are carefully tuned to avoid model drift.
Describe any numerical limitations and issues Free surface formulation does not support rapid changes in water elevation like hydraulic jumps in rivers.


Describe available calibration data sets
Upload calibration data sets if available:
Describe available test data sets
Upload test data sets if available:
Describe ideal data for testing


Do you have current or future plans for collaborating with other researchers?
Is there a manual available? Yes
Upload manual if available: Media:USERS GUIDE for a modesplit sigma-coordinate numerical ocean model.pdf
Model website if any org.uib.no/bom
Model forum / discussion board
Comments


This part will be filled out by CSDMS staff

OpenMI compliant No but possible
BMI compliant No but possible
WMT component No but possible
PyMT component
Is this a data component
Can be coupled with:
Model info
Jarle Berntsen
Avlesen
Nr. of publications: 46
Total citations: 1374
h-index: 18
m-quotient: 0.72
Qrcode BOM.png
Link to this page



Introduction

History

References




Nr. of publications: 46
Total citations: 1374
h-index: 18
m-quotient: 0.72



Featured publication(s)YearModel describedType of ReferenceCitations
Berntsen, Jarle; Furnes, Gunnar; 2005. Internal pressure errors in sigma-coordinate ocean models—sensitivity of the growth of the flow to the time stepping method and possible non-hydrostatic effects. Continental Shelf Research, 25, 829–848. 10.1016/j.csr.2004.09.025
(View/edit entry)
2005 BOM
Model overview 44
See more publications of BOM


Issues

Help

Input Files

Output Files