Model:Sakura: Difference between revisions

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{{Infobox Model
{{Model identity
|model name              = Sakura
|Model type=Single
|developer                = '''Kubo''', Yusuke
|one-line-description    = 3 Equation hyperpycnal flow model 
|type                     = Model
|source                  = <linkedimage>wikipage=Model:Sakura
tooltip=Download Sakura
img_src=Green1.png</linkedimage>
}}
}}
<!-- Edit the part above to update info on other papers -->
{{Start models incorporated}}
 
{{End a table}}
== Sakura ==
{{Model identity2
__TOC__
|ModelDomain=Coastal, Marine
 
|One-line model description=3 Equation hyperpycnal flow model
===Introduction===
|Extended model description=3-equation hyperpycnal flow model.
 
}}
=== History ===
{{Start model keyword table}}
 
{{Model keywords
=== Papers ===
|Model keywords=sediment transport
 
}}
=== Sakura Questionnaire ===
{{End a table}}
 
{{Modeler information
==== Contact Information ====
|First name=Yusuke
 
|Last name=Kubo
{| class="wikitable"
|Type of contact=Model developer
| class="model_col1"| Model:
|Institute / Organization=Center for Deep Earth Exploration (CDEX)
| class="model_col2"| Sakura
|Postal address 1=3173-25 Showa-machi, Kanazawa-ku
|-
|Town / City=Yokohama
| class="model_col1"| Contact person:
|Postal code=236-0001
| class="model_col2"| Yusuke Kubo
|Country=Japan
|-
|Email address=kuboy@jamstec.go.jp
| class="model_col1"| Institute:
}}
| class="model_col2"| --
{{Additional modeler information
|-
|Additional first name=Eric
| class="model_col1"| City:
|Additional last name=Hutton
| class="model_col2"| --
|Additional type of contact=Model developer
|-
|Additional country=United States
| class="model_col1"| Country:
}}
| class="model_col2"| Japan
{{Model technical information
|-
|Supported platforms=Unix, Linux, Mac OS, Windows
| class="model_col1"| Email:
|Programming language=C
| class="model_col2"| --
|Code optimized=Single Processor
|-
|Start year development=2002
| class="model_col1"| 2nd person involved:
|Does model development still take place?=Yes
| class="model_col2"| Eric Hutton
|DevelopmentCode=As is, no updates are provided
|-
|DevelopmentCodeYearChecked=2020
| class="model_col1"| 3rd person involved:
|Source code availability=Through web repository
| class="model_col2"| --
|Source web address=https://github.com/mcflugen/sedflux
|}
|Program license type=Apache public license
 
|Memory requirements=Minimal
==== Model description ====
|Typical run time=Seconds
 
}}
{| class="wikitable"
{{Input - Output description
| class="model_col1"| Model type:
|Describe input parameters=Main input parameters:
| class="model_col2"| Single model
|-
| class="model_col1"| Description:
| class="model_col2"| 3-equation hyperpycnal flow model.
|}
 
==== Technical information ====
 
{| class="wikitable"
| class="model_col1"| Supported platforms:
| class="model_col2"| UNIX, Linux, Mac OSX, Windows
|-
| class="model_col1"| Programming language:
| class="model_col2"|  C
|-
| class="model_col1"| Model was developed started from:
| class="model_col2"| 2002 and development still takes place
|-
| class="model_col1"| To what degree will the model become available:
| class="model_col2"| As code
|-
| class="model_col1"| Current license type:
| class="model_col2"| Apache public license
|-
| class="model_col1"| Memory requirements:
| class="model_col2"| Minimal
|-
| class="model_col1"| Typical run time:
| class="model_col2"| Seconds
|}
 
==== Input / Output description ====
 
{| class="wikitable"
| class="model_col1"| Input parameters:
| class="model_col2"| Main input parameters:
* River velocity, width, depth, and sediment concentration
* River velocity, width, depth, and sediment concentration
* Bathymetry
* Bathymetry
|-
|Input format=ASCII
| class="model_col1"| Input format:
|Describe output parameters=CSV file of final bathymetry and deposit thickness for each grain size contained in the flow
| class="model_col2"| ASCII
|Output format=ASCII
|-
|Pre-processing software needed?=No
| class="model_col1"| Output parameters:
|Post-processing software needed?=No
| class="model_col2"| CSV file of final bathymetry and deposit thickness for each grain size contained in the flow    
|Visualization software needed?=No
|-
}}
| class="model_col1"| Output format:
{{Process description model
| class="model_col2"| ASCII
|Describe processes represented by the model=Hyperpycnal flow
|-
|Describe key physical parameters and equations=See Kubo 2003 (doi:10.1016/j.sedgeo.2003.11.002)
| class="model_col1"| Post-processing software (if needed):
|Describe length scale and resolution constraints=Horizontal resolution is typically 10s of meters
| class="model_col2"| no
|Describe time scale and resolution constraints=A single river flood event.
|-
}}
| class="model_col1"| Visualization software (if needed):
{{Model testing}}
| class="model_col2"| no
{{Users groups model
|}
|Do you have current or future plans for collaborating with other researchers?=None
 
}}
==== Process description ====
{{Documentation model
 
|Manual model available=No
{| class="wikitable"
}}
| class="model_col1"| Processes represented by model:
{{Additional comments model}}
| class="model_col2"| Hyperpycnal flow
{{CSDMS staff part
|-
|OpenMI compliant=No but possible
| class="model_col1"| Key physical parameters & equations:
|IRF interface=No but possible
| class="model_col2"| See Kubo 2003 (doi:10.1016/j.sedgeo.2003.11.002)
|CMT component=No but possible
|-
|CCA component=No but possible
| class="model_col1"| Length scale & resolution constraints:
}}
| class="model_col2"| Horizontal resolution is typically 10s of meters
{{DOI information
|-
|DOI model=10.1594/IEDA/100158
| class="model_col1"| Time scale & resolution constraints:
|DOI assigned to model version=2.1
| class="model_col2"| A single river flood event.
|DOI-year assigned to model version=2011
|-
|DOI-filelink=https://csdms.colorado.edu/pub/models/doi-source-code/sedflux-10.1594.IEDA.100161-2.1.tar.gz
| class="model_col1"| Numerical limitations and issues :
}}
| class="model_col2"|
{{Start coupled table}}
|}
{{End a table}}
 
{{End headertab}}
==== Testing ====
{{{{PAGENAME}}_autokeywords}}
 
<!-- Edit the part above to update info on other papers -->
{| class="wikitable"
| class="model_col1"| Available calibration data sets:
| class="model_col2"|
|-
| class="model_col1"| Available test data sets:
| class="model_col2"| --
|-
| class="model_col1"| Ideal data for testing:
| class="model_col2"| --
|}
 
==== User groups ====
 
{| class="wikitable"
| class="model_col1"| Currently or plans for collaborating with:
| class="model_col2"| None
|}
 
==== Documentation ====
 
{| class="wikitable"
| class="model_col1"| Key papers of the model:
| class="model_col2"| doi:10.1016/j.sedgeo.2003.11.002
|-
| class="model_col1"| Is there a manual available:
| class="model_col2"| no
|-
| class="model_col1"| Model website if any:
| class="model_col2"| --
|}
 
==== Additional comments ====
 
{| class="wikitable"
| class="model_col1"| Comments:
| class="model_col2"| --
|}
 
=== Issues ===
 
=== Help ===
 
=== Input Files ===
 
=== Output Files ===
 
=== Download ===
==== Source-Code Snapshots ====
 
Source-code snapshots are available via ftp at:
 
:http://csdms.colorado.edu/pub/models/sakura
 
The latest version:
:[http://csdms.colorado.edu/pub/models/sakura/sakura-latest.tar.gz sakura-latest.tar.gz]
 
 
 
=== Source ===
''Sakura'' is part of the ''sedflux'' model.  Although it is also available as a seperate distribution, its source code is contained within the sedflux repository.
 
To browse the repository, point your browser to: [http://csdms.colorado.edu/viewvc/sedflux/?root=sedflux http://csdms.colorado.edu/viewvc/sedflux/?root=sedflux]
 
==== Command-Line Access ====
 
If you plan to make changes, use this command to check out the code as yourself using HTTPS:
 
<geshi lang=bash>
# Project members authenticate over HTTPS to allow committing changes.
svn checkout https://csdms.colorado.edu/svn/sedflux/
</geshi>


When prompted, enter your CSDMS Subversion password.


Non-members may only check out a read-only working copy of the project source.


To obtain a CSDMS Subversion account or to become a member of this project, please email [mailto:csdms@colorado.edu csdms@colorado.edu].
==Introduction==


==== GUI and IDE Access ====
== History ==


This project's Subversion repository may be accessed using many different client programs and plug-ins. See your client's documentation for more information.
== References  ==
<br>{{AddReferenceUploadButtons}}<br><br>
{{#ifexist:Template:{{PAGENAME}}-citation-indices|{{{{PAGENAME}}-citation-indices}}|}}<br>
{{Include_featured_references_models_cargo}}<br>


==== Subversion Help ====
== Issues ==


For help on how to use Subversion, an excellent manual is available online at [http://svnbook.red-bean.com/ http://svnbook.red-bean.com/]
== Help ==
{{#ifexist:Model_help:{{PAGENAME}}|[[Model_help:{{PAGENAME}}]]|}}


== Input Files ==


[[Category:Marine]]
== Output Files ==

Latest revision as of 20:17, 16 September 2020



Sakura


Metadata

Also known as
Model type Single
Model part of larger framework
Note on status model
Date note status model
Incorporated models or components:
Spatial dimensions
Spatial extent
Model domain Coastal, Marine
One-line model description 3 Equation hyperpycnal flow model
Extended model description 3-equation hyperpycnal flow model.
Keywords:

sediment transport,

Name Yusuke Kubo
Type of contact Model developer
Institute / Organization Center for Deep Earth Exploration (CDEX)
Postal address 1 3173-25 Showa-machi, Kanazawa-ku
Postal address 2
Town / City Yokohama
Postal code 236-0001
State
Country Japan
Email address kuboy@jamstec.go.jp
Phone
Fax


Name Eric Hutton
Type of contact Model developer
Institute / Organization
Postal address 1
Postal address 2
Town / City
Postal code
State
Country United States
Email address
Phone
Fax


Supported platforms
Unix, Linux, Mac OS, Windows
Other platform
Programming language

C

Other program language
Code optimized Single Processor
Multiple processors implemented
Nr of distributed processors
Nr of shared processors
Start year development 2002
Does model development still take place? Yes
If above answer is no, provide end year model development
Code development status As is, no updates are provided
When did you indicate the 'code development status'? 2020
Model availability
Source code availability
(Or provide future intension) 		Through web repository
Source web address https://github.com/mcflugen/sedflux
Source csdms web address
Program license type Apache public license
Program license type other
Memory requirements Minimal
Typical run time Seconds


Describe input parameters Main input parameters:
  • River velocity, width, depth, and sediment concentration
  • Bathymetry
Input format ASCII
Other input format
Describe output parameters CSV file of final bathymetry and deposit thickness for each grain size contained in the flow
Output format ASCII
Other output format
Pre-processing software needed? No
Describe pre-processing software
Post-processing software needed? No
Describe post-processing software
Visualization software needed? No
If above answer is yes
Other visualization software


Describe processes represented by the model Hyperpycnal flow
Describe key physical parameters and equations See Kubo 2003 (doi:10.1016/j.sedgeo.2003.11.002)
Describe length scale and resolution constraints Horizontal resolution is typically 10s of meters
Describe time scale and resolution constraints A single river flood event.
Describe any numerical limitations and issues


Describe available calibration data sets
Upload calibration data sets if available:
Describe available test data sets
Upload test data sets if available:
Describe ideal data for testing


Do you have current or future plans for collaborating with other researchers? None
Is there a manual available? No
Upload manual if available:
Model website if any
Model forum / discussion board
Comments


This part will be filled out by CSDMS staff

OpenMI compliant No but possible
BMI compliant No but possible
WMT component No but possible
PyMT component
Is this a data component
DOI model 10.1594/IEDA/100158
For model version 2.1
Year version submitted 2011
Link to file https://csdms.colorado.edu/pub/models/doi-source-code/sedflux-10.1594.IEDA.100161-2.1.tar.gz
Can be coupled with:
Model info
Authors
Yusuke Kubo
Hutton
Source code
DOI

Model citations
Nr. of publications: 2
Total citations: 59
h-index: 1
m-quotient: 0.05
QR-code
Qrcode Sakura.png
Link to this page
Other models by author



Introduction

History

References



Nr. of publications: 2
Total citations: 59
h-index: 1
m-quotient: 0.05



Featured publication(s)YearModel describedType of ReferenceCitations
Kubo, Yu'suke; 2004. Experimental and numerical study of topographic effects on deposition from two-dimensional, particle-driven density currents. Sedimentary Geology, 164, 311–326. 10.1016/j.sedgeo.2003.11.002
(View/edit entry)		2004 Sakura
 Model overview 59
Kubo, Y.; Hutton, E.W.H.; 2011. Sakura, version 2.1.. , , https://csdms.colorado.edu/pub/models/doi-source-code/sedflux-10.1594.IEDA.100161-2.1.tar.gz. 10.1594/IEDA/100158
(View/edit entry)		2011 Sakura

Source code ref.

0
See more publications of Sakura


Issues

Help

Input Files

Output Files

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