Model:FVCOM: Difference between revisions

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{{Model identity
|Model type=Modular
}}
{{Start models incorporated}}
{{End a table}}
{{Model identity2
|ModelDomain=Coastal, Marine
|Spatial dimensions=3D
|Spatialscale=Global, Continental, Regional-Scale
|One-line model description=The Unstructured Grid Finite Volume Coastal Ocean Model
|Extended model description=FVCOM is a prognostic, unstructured-grid, finite-volume, free-surface, 3-D primitive equation coastal ocean circulation model developed by UMASSD-WHOI joint efforts. The model consists of momentum, continuity, temperature, salinity and density equations and is closed physically and mathematically using turbulence closure submodels. The horizontal grid is comprised of unstructured triangular cells and the irregular bottom is preseented using generalized terrain-following coordinates. The General Ocean Turbulent Model (GOTM) developed by Burchard’s research group in Germany (Burchard, 2002) has been added to FVCOM to provide optional vertical turbulent closure schemes. FVCOM is solved numerically by a second-order accurate discrete flux calculation in the integral form of the governing equations over an unstructured triangular grid. This approach combines the best features of finite-element methods (grid flexibility) and finite-difference methods (numerical efficiency and code simplicity) and provides a much better numerical representation of both local and global momentum, mass, salt, heat, and tracer conservation.  The ability of FVCOM to accurately solve scalar conservation equations in addition to the topological flexibility provided by unstructured meshes and the simplicity of the coding structure has make FVCOM ideally suited for many coastal and interdisciplinary scientific applications.
}}
{{Start model keyword table}}
{{Model keywords
|Model keywords=physical oceanography
}}
{{End a table}}
{{Modeler information
{{Modeler information
|First name=Changsheng
|First name=Changsheng
Line 7: Line 24:
|Town / City=Dartmouth
|Town / City=Dartmouth
|Postal code=02744
|Postal code=02744
|Country=United States
|State=Massachusetts
|State=Massachusetts
|Country=USA
|Email address=c1chen@umassd.edu
|Email address=c1chen@umassd.edu
|Phone=508-910-6388
|Phone=508-910-6388
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|Additional town / City=Woods Hole
|Additional town / City=Woods Hole
|Additional postal code=02543
|Additional postal code=02543
|Additional country=USA
|Additional country=United States
|Additional email address=rbeardsley@whoi.edu
|Additional email address=rbeardsley@whoi.edu
|Additional phone=+1 508 289 2536
|Additional phone=+1 508 289 2536
|Additional fax=+1 508 457 2181
|Additional fax=+1 508 457 2181
}}
{{Model identity
|Model type=Modular
|Categories=Coastal, Marine
|Spatial dimensions=3D
|Spatialscale=Global, Continental, Regional-Scale
|One-line model description=The Unstructured Grid Finite Volume Coastal Ocean Model
|Extended model description=FVCOM is a prognostic, unstructured-grid, finite-volume, free-surface, 3-D primitive equation coastal ocean circulation model developed by UMASSD-WHOI joint efforts. The model consists of momentum, continuity, temperature, salinity and density equations and is closed physically and mathematically using turbulence closure submodels. The horizontal grid is comprised of unstructured triangular cells and the irregular bottom is preseented using generalized terrain-following coordinates. The General Ocean Turbulent Model (GOTM) developed by Burchard’s research group in Germany (Burchard, 2002) has been added to FVCOM to provide optional vertical turbulent closure schemes. FVCOM is solved numerically by a second-order accurate discrete flux calculation in the integral form of the governing equations over an unstructured triangular grid. This approach combines the best features of finite-element methods (grid flexibility) and finite-difference methods (numerical efficiency and code simplicity) and provides a much better numerical representation of both local and global momentum, mass, salt, heat, and tracer conservation.  The ability of FVCOM to accurately solve scalar conservation equations in addition to the topological flexibility provided by unstructured meshes and the simplicity of the coding structure has make FVCOM ideally suited for many coastal and interdisciplinary scientific applications.
}}
{{Model keywords
|Model keywords=physical oceanography
}}
}}
{{Model technical information
{{Model technical information
|Supported platforms=Linux
|Supported platforms=Linux
|Programming language=Fortran90
|Programming language=Fortran90
|Code optimized=Single Processor, Parallel
|Code optimized=Single Processor, Multiple Processors
Computing
|Start year development=2001
|Start year development=2001
|Does model development still take place?=Yes
|Does model development still take place?=Yes
|DevelopmentCode=Active
|DevelopmentCodeYearChecked=2020
|Model availability=As code
|Model availability=As code
|Source code availability=Through web repository
|Source code availability=Through web repository
|Source web address=http://fvcom.smast.umassd.edu/FVCOM/Source/code.htm
|Source web address=https://github.com/FVCOM-GitHub/fvcom
|Program license type=Other
|Program license type=Other
|Program license type other=FVCOM End User License Agreement University of Massachusetts – Dartmouth
|Program license type other=FVCOM End User License Agreement University of Massachusetts – Dartmouth
|OpenMI compliant=No but possible
|CCA component=No but possible
|IRF interface=No but possible
|CMT component=Not yet
|Memory requirements=--
|Memory requirements=--
|Typical run time=--
|Typical run time=--
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|Describe available calibration data sets=FVCOM was originally developed for the estuarine flooding/drying process in estuaries and the tidal-, buoyancy- and wind-driven circulation in the coastal region featured with complex irregular geometry and steep bottom topography. This model has been upgraded to the spherical coordinate system for basin and global applications. A non-hydrostatic version of FVCOM has been coded and is being tested.
|Describe available calibration data sets=FVCOM was originally developed for the estuarine flooding/drying process in estuaries and the tidal-, buoyancy- and wind-driven circulation in the coastal region featured with complex irregular geometry and steep bottom topography. This model has been upgraded to the spherical coordinate system for basin and global applications. A non-hydrostatic version of FVCOM has been coded and is being tested.
See also website for model validations.
See also website for model validations.
|Describe available test data sets=--
|Describe ideal data for testing=--
}}
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{{Users groups model
{{Users groups model
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{{Documentation model
{{Documentation model
|Provide key papers on model if any=Key Papers:
*’’’Chen, C. S., Liu, H. D., Beardsey, R. C., 2003. An Unstructured Grid, Finite-Volume, Three-Dimensional, Primitive Equations Ocean Model: Application to Coastal Ocean and Estuaries. Journal of Atmospheric and Oceanic Technology, 20, 159~186, Doi: ([http://dx.doi.org/10.1175/1520-0426(2003)020<0159:AUGFVT>2.0.CO;2 10.1175/1520-0426(2003)020<0159:AUGFVT>2.0.CO;2])
*’’’Chen C. S., Huang, H. S., Beardsley, R. C., Liu, H. D., Xu, Q. C., Cowles, G., 2007. A finite volume numerical approach for coastal ocean circulation studies: Comparisons with finite difference models. Journal of Geophysical Research, 12, C03018, Doi: ([http://dx.doi.org/10.1029/2006JC003485 10.1029/2006JC003485]).
*’’’Chen, C., G. Gao, J. Qi, A. Proshutinsky, R. Beardsley, H. Lin, G. Cowles, and H. Huang, 2009. A new high-resolution unstructured-grid, finite-volume Arctic Ocean model (AO-FVCOM): An application for tidal simulation, Journal of Geophysical Research, 114, C08017, Doi: ([http://dx.doi.org/10.1029/2008JC004941 10.1029/2008JC004941]).’’’
*’’’Lai, Z., C. Chen, G. Cowles, and R.C. Beardsley, 2010. A non-hydrostatic version of FVCOM-validation experiment II: Lock-exchange flow and internal solitary waves, Journal of Geophysical Research, 115, C11010, Doi: ([http://dx.doi.org/10.1029/2009JC005525 10.1029/2009JC005525]).’’’
*’’’Lai, Z., C. Chen, G. Cowles, and R.C. Beardsley, 2010. A non-hydrostatic version of FVCOM-validation experiment I: surface standing and solitary waves, Journal of Geophysical Research, 115, C11010, Doi: ([http://dx.doi.org/10.1029/2009JC005525 10.1029/2009JC005525]).
Other Papers:
* Chen, C., P. Xue, P. Ding, R.C. Beardsley, Q. Xu, X. Mao, G. Gao, J. Qi, C. Li, H. Lin, G. Cowles, and M. Shi, 2008, Physical mechanisms for the offshore detachment of the Changjiang diluted water in the East China Sea, J. Geophy. Res., 113, C02002, Doi: ([http://dx.doi.org/10.1029/2006JC003994 10.1029/2006JC003994]).
* Chen, C., Q. Xu, R. Houghton and R. C. Beardsley, 2008. A model-dye comparison experiment in the tidal mixing front zone on the southern flank of Georges Bank.  J. Geophys. Res., 113, C02005, Doi: ([http://dx.doi.org/10.1029/2007jc004106 10.1029/2007jc004106]).
* Chen, C, J. Qi, C. Li, R. C. Beardsley, H. Lin, R. Walker and K. Gates, 2008. Complexity of the flooding/drying process in an estuarine tidal-creek salt-marsh system: an application of FVCOM (DRAFT). J. Geophys. Res. Doi: ([http://dx.doi.org/10.1029/2007JC004328 10.1029/2007JC004328]).
*Chen, C., P. Malanotte-Rizzoli, J. Wei, R. Beardsley, Z. Lai, P. Xue, S.J Lyu, Q. Xu, J. Qi, and G. Cowles, Validation of Kalman Filters for Coastal Ocean Problems: An Experiment with FVCOM, J. Geophys. Res., submitted.
* Chen, C., R.C. Beardsley, Q. Xu, G. Cowles, and R. Limeburner, Tidal dynamics in the Gulf of Maine and New England Shelf: An application of FVCOM, J. Geophys. Res., in revision.
* Qi, J., C. Chen, R.C. Beardsley, W. Perrie, G. Cowles, and Z. Lai. An unstructured-grid, finite-volume wave model (UG-SWAN): Implementation, validation, and applications". Ocean Modelling, submitted.
* Tian, R.C., C. Chen, K. Stokesbury, B. Rothschild, G. Cowles, Q. Xu, S. Hu, B. Harris, and M. Marino, Interannual variability in scallop larval dispersal and settlement on Georges Bank: A modeling experiment ,Marine Ecology Progress Series, submitted.
* Weisberg, R.H. and L.Y. Zheng. Ivan-like hurricane storm surges for the Tampa Bay, Florida region simulated with 3-D and 2-D models. J. Geophy. Res., submitted.
* Zheng, L.Y. and R.H. Weisberg, 2010. Rookery Bay and Naples Bay circulation simulations: Applications to tides and fresh water inflow regulation. Ecological Modelling, 7, 986~996, Doi: ([http://dx.doi.org/10.1016/j.ecolmodel.2009.01.024 10.1016/j.ecolmodel.2009.01.024]).
|Manual model available=Yes
|Manual model available=Yes
|Model website if any=http://fvcom.smast.umassd.edu/FVCOM/index.html
|Model website if any=http://fvcom.smast.umassd.edu/FVCOM/index.html
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|Comments=FVCOM is an open source code ocean community model that always welcomes new users. This program is only permitted for use in non-commercial academic research and education. Users are required to register in orde to receive the source codes, demo examples, and user manuals as well as some recommended postprocessing tools.
|Comments=FVCOM is an open source code ocean community model that always welcomes new users. This program is only permitted for use in non-commercial academic research and education. Users are required to register in orde to receive the source codes, demo examples, and user manuals as well as some recommended postprocessing tools.
}}
}}
{{CSDMS staff part
|OpenMI compliant=No but possible
|IRF interface=No but possible
|CMT component=No but possible
|CCA component=No but possible
}}
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==Introduction==
==Introduction==
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== History ==
== History ==


== Papers ==
== References  ==
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== Issues ==
== Issues ==


== Help ==
== Help ==
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== Input Files ==
== Input Files ==


== Output Files ==
== Output Files ==
== Download ==
== Source ==

Latest revision as of 20:16, 16 September 2020



FVCOM


Metadata

Also known as
Model type Modular
Model part of larger framework
Note on status model
Date note status model
Incorporated models or components:
Spatial dimensions 3D
Spatial extent Global, Continental, Regional-Scale
Model domain Coastal, Marine
One-line model description The Unstructured Grid Finite Volume Coastal Ocean Model
Extended model description FVCOM is a prognostic, unstructured-grid, finite-volume, free-surface, 3-D primitive equation coastal ocean circulation model developed by UMASSD-WHOI joint efforts. The model consists of momentum, continuity, temperature, salinity and density equations and is closed physically and mathematically using turbulence closure submodels. The horizontal grid is comprised of unstructured triangular cells and the irregular bottom is preseented using generalized terrain-following coordinates. The General Ocean Turbulent Model (GOTM) developed by Burchard’s research group in Germany (Burchard, 2002) has been added to FVCOM to provide optional vertical turbulent closure schemes. FVCOM is solved numerically by a second-order accurate discrete flux calculation in the integral form of the governing equations over an unstructured triangular grid. This approach combines the best features of finite-element methods (grid flexibility) and finite-difference methods (numerical efficiency and code simplicity) and provides a much better numerical representation of both local and global momentum, mass, salt, heat, and tracer conservation. The ability of FVCOM to accurately solve scalar conservation equations in addition to the topological flexibility provided by unstructured meshes and the simplicity of the coding structure has make FVCOM ideally suited for many coastal and interdisciplinary scientific applications.
Keywords:

physical oceanography,

Name Changsheng Chen
Type of contact Model developer
Institute / Organization University of Massachusetts
Postal address 1 706 South Rodney French Blvd
Postal address 2
Town / City Dartmouth
Postal code 02744
State Massachusetts
Country United States
Email address c1chen@umassd.edu
Phone 508-910-6388
Fax (508) 910-6371


Name Robert Beardsley
Type of contact Model developer
Institute / Organization Woods Hole Oceanographic Institution
Postal address 1
Postal address 2
Town / City Woods Hole
Postal code 02543
State
Country United States
Email address rbeardsley@whoi.edu
Phone +1 508 289 2536
Fax +1 508 457 2181


Supported platforms
Linux
Other platform
Programming language

Fortran90

Other program language
Code optimized Single Processor, Multiple Processors
Multiple processors implemented
Nr of distributed processors
Nr of shared processors
Start year development 2001
Does model development still take place? Yes
If above answer is no, provide end year model development
Code development status Active
When did you indicate the 'code development status'? 2020
Model availability As code
Source code availability
(Or provide future intension)
Through web repository
Source web address https://github.com/FVCOM-GitHub/fvcom
Source csdms web address
Program license type Other
Program license type other FVCOM End User License Agreement University of Massachusetts – Dartmouth
Memory requirements --
Typical run time --


Describe input parameters Tides, Winds, Heat flux, Preccipitation/Evaporation, River discharges, Groundwater, O.B. fluxes
Input format ASCII, Binary
Other input format
Describe output parameters --
Output format Binary
Other output format NetCDF
Pre-processing software needed? No
Describe pre-processing software
Post-processing software needed? Yes
Describe post-processing software GUI Post-process tools
Visualization software needed? Yes
If above answer is yes
Other visualization software Visit


Describe processes represented by the model The present version of FVCOM includes a number of options and components as shown in Figure above. These include:
  1. choice of Cartesian or spherical coordinate system,
  2. a mass-conservative wet/dry point treatment for the flooding/drying process simulation,
  3. the General Ocean Turbulent Model (GOTM) modules (Burchard et al., 1999; Burchard, 2002) for optional vertical turbulent mixing schemes,
  4. a water quality module to simulate dissolved oxygen and other environmental indicators,
  5. 4-D nudging and Reduced/Ensemble Kalman Filters (implemented in collaboration with P. Rizzoli at MIT) for data assimilation,
  6. fully-nonlinear ice models (implemented by F. Dupont),
  7. a 3-D sediment transport module (based on the U.S.G.S. national sediment transport model) for estuarine and near-shore applications, and
  8. a flexible biological module (FBM) for food web dynamics study.

FBM includes seven groups: nutrients, autotrophy, heterotrophy, detritus, dissolved organic matter, bacteria, and other. With various pre-built functions and parameters for these groups, GBM allows users to either select a pre-built biological model (such as NPZ, NPZD, etc.) or to build their own biological model using the pre-defined pool of biological variables and parameterization functions.

Describe key physical parameters and equations
Describe length scale and resolution constraints --
Describe time scale and resolution constraints --
Describe any numerical limitations and issues --


Describe available calibration data sets FVCOM was originally developed for the estuarine flooding/drying process in estuaries and the tidal-, buoyancy- and wind-driven circulation in the coastal region featured with complex irregular geometry and steep bottom topography. This model has been upgraded to the spherical coordinate system for basin and global applications. A non-hydrostatic version of FVCOM has been coded and is being tested.

See also website for model validations.

Upload calibration data sets if available:
Describe available test data sets
Upload test data sets if available:
Describe ideal data for testing


Do you have current or future plans for collaborating with other researchers? --
Is there a manual available? Yes
Upload manual if available:
Model website if any http://fvcom.smast.umassd.edu/FVCOM/index.html
Model forum / discussion board http://foros.dgeo.udec.cl/fvcom/
Comments FVCOM is an open source code ocean community model that always welcomes new users. This program is only permitted for use in non-commercial academic research and education. Users are required to register in orde to receive the source codes, demo examples, and user manuals as well as some recommended postprocessing tools.


This part will be filled out by CSDMS staff

OpenMI compliant No but possible
BMI compliant No but possible
WMT component No but possible
PyMT component
Is this a data component
Can be coupled with:
Model info
Changsheng Chen
Beardsley
Nr. of publications: 358
Total citations: 7866
h-index: 40
m-quotient: 1.9
Qrcode FVCOM.png
Link to this page




Introduction

History

References




Nr. of publications: 358
Total citations: 7866
h-index: 40
m-quotient: 1.9



Featured publication(s)YearModel describedType of ReferenceCitations
Chen, Changsheng; Liu, Hedong; Beardsley, Robert C.; 2003. An Unstructured Grid, Finite-Volume, Three-Dimensional, Primitive Equations Ocean Model: Application to Coastal Ocean and Estuaries. Journal of Atmospheric and Oceanic Technology, 20, 159–186. 10.1175/1520-0426(2003)0202.0.CO;2
(View/edit entry)
2003 FVCOM
Model overview 1338
See more publications of FVCOM


Issues

Help

Input Files

Output Files