Model:FVCOM: Difference between revisions

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|CCA component=No but possible
|CCA component=No but possible
|IRF interface=No but possible
|IRF interface=No but possible
|CMT component=Not yet
|Memory requirements=--
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* Chen, C., Q. Xu, R. Houghton and R. C. Beardsley, 2008. "A model-dye comparison experiment in the tidal mixing front zone on the southern flank of Georges Bank". J. Geophys. Res., 113, C02005, doi; 10.1029/2007jc004106
* Chen, C., Q. Xu, R. Houghton and R. C. Beardsley, 2008. "A model-dye comparison experiment in the tidal mixing front zone on the southern flank of Georges Bank". J. Geophys. Res., 113, C02005, doi; 10.1029/2007jc004106
* Chen, C, J. Qi, C. Li, R. C. Beardsley, H. Lin, R. Walker and K. Gates, 2008. "Complexity of the flooding/drying process in an estuarine tidal-creek salt-marsh system: an application of FVCOM (DRAFT)". J. Geophys. Res. doi: 10.1029/2007jc004328, in press.
* Chen, C, J. Qi, C. Li, R. C. Beardsley, H. Lin, R. Walker and K. Gates, 2008. "Complexity of the flooding/drying process in an estuarine tidal-creek salt-marsh system: an application of FVCOM (DRAFT)". J. Geophys. Res. doi: 10.1029/2007jc004328, in press.
* Chen, C., L. Zhao, G. Cowles and B. Rothschild, 2008. "Critical issues for modeling studies of Narragansett Bay and Mount Hope Bay". in Science for Ecosystem-based Management, Narragansett Bay in the 21st Century, 10.1007/978-0-387-35299-2 , 281-300.
* Cowles, G.W., S.J. Lentz, C. Chen, R.C. Beardsley, and Q. Xu, "Comparison of observed and model-computed low frequency circulation and hydrography on the New England Shelf (DRAFT)", Journal of Geophysical Research, in press.
* Cowles, G.W., 2008, "Parallelization of the FVCOM Coastal Ocean Model", International Journal of High Performance Computing Applications, 22 (2), 177-193.
* Hu, S., D.W. Townsend, C. Chen, G.W. Cowles, R. C. Beardsley, R. Ji, and R.W. Houghton, “Tidal Pumping onto Georges Bank: A Process-Oriented Modeling Study of Nutrient Flux, Journal of Marine Systems, in press.
* Huang, H. C. Chen, J. O. Blanton, F. A. Andreade, 2008. "Numerical study of tidal asymmetry in the Okatee Creek, South Carolina", Estuaries, Coastal and Shelf Science,78, 190-202.
* Huang, H., C. Chen, G.W. Cowles, C.D. Winant, R.C. Beardsley, K. Hedstrom, and D.B. Haidvogel, "FVCOM Validation Experiments: Comparison with ROMS for Three Idealized Barotropic Test Problems (DRAFT)", Journal of Geophysical Research, in press.
* Ji, R., C. Davis, C. Chen, and R. Beardsley, 2008 "Influence of local and external processes on the annual nitrogen cycle and primary productivity on Georges Bank: A 3-D biological-physical modeling study". Journal of Marine System, in press.
* Lee C, T Khangaonkar and Z Yang. 2008. "Application of Hydrodynamic and Sediment Transport Model for the Restoration Feasibility Assessment- Cottonwood Island, Washington." In Estuarine and Coastal Modeling, ML Spaulding (ed). Proceedings of the 10th International Conference. American Society of Civil Engineers, Newport, RI.
* Li, C., C. Chen, G. Guadagnoli and I. Y. Georgiou, 2008. "Geometry induced residual eddies in estuaries with curved channel-observations and modeling studies". J. Geophys. Res., in press
* Yang Z, and TP Khangaonkar. 2008. " Modeling the Hydrodynamics of Puget Sound using a Three-dimensional Unstructured Finite Volume Coastal Ocean Model." In Estuarine and Coastal Modeling, ML Spaulding (ed). Proceedings of the 10th International Conference (accepted for publication). American Society of Civil Engineers, Newport, RI.
* Yang, Z. and T. Khangaonkar. 2007. "Modeling of Salt Intrusion, Intertidal Mixing, and Circulation in a Braided Estuary". Journal of Coastal Research, accepted.
* Chen, C. H. Huang, R. C. Beardsley, H. Liu, Q. Xu and G. Cowles, 2007. "A finite-volume numerical approach for coastal ocean ciirculation studies: comparisons with finite difference models". J. Geophys. Res. 112, C03018, doi:10.1029/2006JC003485.
* Frick WE, T. Khangaonkar, AC Sigleo, and Z Yang. 2007. "Estuarine-ocean exchange in a North Pacific estuary: comparison of steady state and dynamic model." Estuarine, Coastal and Shelf Science 74(1-2):1-11.
* Huret, M., J. Runge, C. Chen, G. Cowles, Q. Xu, and J. Pringle, 2007. "Dispersal modeling of fish early live stages: Sensitivity analysis with application to Atlantic Cod in the western Gulf of Maine", Marine Ecology Progress Series, 347, 261-274.
* Ji. R., C. Davis, C. Chen, D. W. Townsend , D. G. Mountain and R. C. Beardsley, 2007. "Influence of ocean freshening on shelf phytoplantkon dynamics". Geophys. Res. Lett. L24607, doi: 10.1029/2007GL032010
* Chen, C, R. C. Beardsley and G. Cowles, 2006. "An unstructured grid, finite-volume coastal ocean model (FVCOM) system". Special Issue entitled “Advances in Computational Oceanography”, Oceanography, vol. 19, No. 1, 78-89.
* Chen, C., G. Cowles, and R.C. Beardsley, 2006. "An unstructured grid, finite volume coastal ocean model: FVCOM User Manual, Second Edition". SMAST/UMASSD Technical Report-06-0602, pp. 315.
* Isobe, A., and R.C. Beardsley, 2006, "An estimate of the cross-frontal transport at the shelf break of the East China Sea with the Finite Volume Coastal Ocean Model", J. of Geophys. Res., 111, C03012, doi:10.1029/2005JC002390.
* Ji, R. C. Chen, P. J. S. Franks, D. W. Townsend, E. G. Durbin, R. C. Beardsley, R. G. Lough, R.W. Houghton, 2006. "The Impact of Scotian Shelf Water "cross-over" on the plankton dynamics on Georges Bank: A 3-D experiment for the 1999 spring bloom". Deep-Sea Res. II, 53, 2684-2707.
* C. Johnson, J. Pringle, and C. Chen, 2006. "Transport and retenton of dormant copepods in the Gulf of Maine". Deep-Sea Res. II, 53, 2520-2536
* Pringle, J.M., 2006. Sources of variability in Gulf of Maine Circulation. Deep Sea Research II, 53, 2457.
* Tian, R. and C. Chen, 2006. "Influence of model geometrical fitting and turbulence parameterization on phytoplankton simulation in the Gulf of Maine", Deep-Sea Res. II, 53, 2808-2832.
* Weisberg, R.H. and L.Y. Zheng, 2006: "A simulation of the Hurricane Charley storm surge and its breach of North Captiva Island",. Florida Scientist, 69(S2): 152-169.
* Weisberg, R.H. and L.Y. Zheng, 2006: "Hurricane Storm Surge Simulations for Tampa Bay". Estuaries and Coasts, 29(6A): 899-913.
* Weisberg, R.H. and L.Y. Zheng, 2006:"Circulation of Tampa Bay driven by buoyancy, tides, and winds, as simulated using a finite volume coastal ocean model". J. Geophys. Res., 111, C01005, doi:10.1029/2005JC003067
* Yang Z, H. Liu, and T. Khangaonkar. 2006. "Development of a Hydrodynamic Model for Skagit River Estuary for Estuarine Restoration Feasibility Assessment." In Estuarine and Coastal Modeling, ML Spaulding (ed). Proceedings of the 9th International Conference, pp. 734-751. American Society of Civil Engineers, Charleston, SC.
* Zhao, L., C. Chen, and G. Cowles, 2006. "Tidal flushing and eddy formation in Mount Hope Bay and Narrangansett Bay: an application of FVCOM", Journal of Geophysical Research, 111.
* Chen, C, G. Cowles and R. C. Beardsley, 2004. "An unstructured grid, finite-volume coastal ocean model: FVCOM User Manual". SMAST/UMASSD Technical Report-04-0601, pp183.
* Chen, C. H. Liu, R. C. Beardsley, 2003. "An unstructured, finite-volume, three-dimensional, primitive equation ocean model: application to coastal ocean and estuaries". Journal of Atmospheric and OceanicTechnology, 20, 159-186.
|Manual model available=Yes
|Manual model available=Yes
|Model website if any=http://fvcom.smast.umassd.edu/FVCOM/index.html
|Model website if any=http://fvcom.smast.umassd.edu/FVCOM/index.html

Revision as of 06:02, 16 January 2011

Contact

Name Changsheng Chen
Type of contact Model developer
Institute / Organization University of Massachusetts
Postal address 1 706 South Rodney French Blvd
Postal address 2
Town / City Dartmouth
Postal code 02744
State Massachusetts
Country USA"USA" is not in the list (Afghanistan, Albania, Algeria, Andorra, Angola, Antigua and Barbuda, Argentina, Armenia, Australia, Austria, ...) of allowed values for the "Country" property.
Email address c1chen@umassd.edu
Phone 508-910-6388
Fax (508) 910-6371


Name Robert Beardsley
Type of contact Model developer
Institute / Organization Woods Hole Oceanographic Institution
Postal address 1
Postal address 2
Town / City Woods Hole
Postal code 02543
State
Country USA"USA" is not in the list (Afghanistan, Albania, Algeria, Andorra, Angola, Antigua and Barbuda, Argentina, Armenia, Australia, Austria, ...) of allowed values for the "Additional country" property.
Email address rbeardsley@whoi.edu
Phone +1 508 289 2536
Fax +1 508 457 2181



FVCOM


Metadata

Summary

Also known as
Model type Modular
Model part of larger framework
Note on status model
Date note status model

Technical specs

Supported platforms
Linux
Other platform
Programming language

Fortran90

Other program language
Code optimized Single Processor, Parallel

Computing"Parallel </br>Computing" is not in the list (Single Processor, Multiple Processors) of allowed values for the "Code optimized" property.

Multiple processors implemented
Nr of distributed processors
Nr of shared processors
Start year development 2001
Does model development still take place? Yes
If above answer is no, provide end year model development
Code development status
When did you indicate the 'code development status'?
Model availability As code
Source code availability
(Or provide future intension)
Through web repository
Source web address http://fvcom.smast.umassd.edu/FVCOM/Source/code.htm
Source csdms web address
Program license type Other
Program license type other FVCOM End User License Agreement University of Massachusetts – Dartmouth
Memory requirements --
Typical run time --


In/Output

Describe input parameters Tides, Winds, Heat flux, Preccipitation/Evaporation, River discharges, Groundwater, O.B. fluxes
Input format ASCII, Binary
Other input format
Describe output parameters --
Output format Binary
Other output format NetCDF
Pre-processing software needed? No
Describe pre-processing software
Post-processing software needed? Yes
Describe post-processing software GUI Post-process tools
Visualization software needed? Yes
If above answer is yes
Other visualization software Visit


Process

Describe processes represented by the model The present version of FVCOM includes a number of options and components as shown in Figure above. These include:
  1. choice of Cartesian or spherical coordinate system,
  2. a mass-conservative wet/dry point treatment for the flooding/drying process simulation,
  3. the General Ocean Turbulent Model (GOTM) modules (Burchard et al., 1999; Burchard, 2002) for optional vertical turbulent mixing schemes,
  4. a water quality module to simulate dissolved oxygen and other environmental indicators,
  5. 4-D nudging and Reduced/Ensemble Kalman Filters (implemented in collaboration with P. Rizzoli at MIT) for data assimilation,
  6. fully-nonlinear ice models (implemented by F. Dupont),
  7. a 3-D sediment transport module (based on the U.S.G.S. national sediment transport model) for estuarine and near-shore applications, and
  8. a flexible biological module (FBM) for food web dynamics study.

FBM includes seven groups: nutrients, autotrophy, heterotrophy, detritus, dissolved organic matter, bacteria, and other. With various pre-built functions and parameters for these groups, GBM allows users to either select a pre-built biological model (such as NPZ, NPZD, etc.) or to build their own biological model using the pre-defined pool of biological variables and parameterization functions.

Describe key physical parameters and equations
Describe length scale and resolution constraints --
Describe time scale and resolution constraints --
Describe any numerical limitations and issues --


Testing

Describe available calibration data sets FVCOM was originally developed for the estuarine flooding/drying process in estuaries and the tidal-, buoyancy- and wind-driven circulation in the coastal region featured with complex irregular geometry and steep bottom topography. This model has been upgraded to the spherical coordinate system for basin and global applications. A non-hydrostatic version of FVCOM has been coded and is being tested.

See also website for model validations.

Upload calibration data sets if available:
Describe available test data sets --
Upload test data sets if available:
Describe ideal data for testing --


Other

Do you have current or future plans for collaborating with other researchers? --
Is there a manual available? Yes
Upload manual if available:
Model website if any http://fvcom.smast.umassd.edu/FVCOM/index.html
Model forum / discussion board http://foros.dgeo.udec.cl/fvcom/
Comments FVCOM is an open source code ocean community model that always welcomes new users. This program is only permitted for use in non-commercial academic research and education. Users are required to register in orde to receive the source codes, demo examples, and user manuals as well as some recommended postprocessing tools.

Introduction

History

Papers

Issues

Help

Input Files

Output Files

Download

Source