View source for User:Mpiper

{{Signup information member
|First name member=Mark
|Last name member=Piper
|Picture member=Mp-with-coffee.jpg
|Institute member=CSDMS
|Postal address 1 member=4001 Discovery Dr.
|City member=Boulder
|Postal code member=80303 
|Country member=United States
|State member=Colorado
|Confirm email member=mark.piper@colorado.edu
|Working group member=Education and Knowledge Transfer (EKT) Working Group, Cyberinformatics and Numerics Working Group
|Emaillist group member=yes
}}

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==Software development==

* [[CSDMS Best Practices for Software Development]], a document (under construction) that Eric, Mariela, and I have been thinking about for a long time
* [[Test shell type]]
* [[Installing a Python distro for testing and development]]
** [[Shorter Miniconda install instructions]]

==WMT==

The CSDMS Web Modeling Tool (WMT) can be found at https://csdms.colorado.edu/wmt.

General information:

* The [[CSDMS_Web_Modeling_Tool|CSDMS Web Modeling Tool]]
* The WMT 1.0 release [[WMT_1.0_release|announcement]]
* The WMT 1.1 release [[WMT_1.1_release|announcement]]

Using WMT:

* [[WMT_help|WMT Help]]
* [[WMT_tutorial|WMT Tutorial]]

Developer notes for installing and configuring WMT:

* [[Installing_a_WMT_executor|Installing a WMT executor]]
** [[TestingExecutorSiwenna|wmt-testing executor on siwenna]]
** [[PermafrostExecutorSiwenna|wmt-permafrost executor on siwenna]]
** [[PbsExecutorSiwenna|PBS executor on siwenna]]
** [[TestingExecutorBlanca|wmt-testing executor on blanca]]
** [[PermafrostExecutorBlanca|wmt-permafrost executor on blanca]]
* [[Installing_a_WMT_server|Installing a WMT server]]
** [[PermafrostServerDiluvium|wmt-permafrost server on diluvium]]
** [[AnalystServerDiluvium|wmt-analyst server on diluvium]]
** [[PbsServerDiluvium|PBS server on diluvium]]
* Installing a WMT client
** [[Build and deploy a WMT client]]
* [[Uncategorized WMT developer notes]]

WMT source code:

* [https://github.com/csdms/wmt-client wmt-client]
* [https://github.com/csdms/wmt wmt-server]
* [https://github.com/csdms/wmt-exe wmt-executor]

We're using "WMT" and "PyMT", by analogy with NumPy and SciPy (but not Astropy).
Eric and I were thinking earlier that we should use "wMT" and "pyMT" to emphasize that they're modeling tools.

==Dakota==

I've set up a [[Dakota|wiki page]] for all things Dakota.

Individual pages:

* [[Dakotathon|Dakotathon]] wiki page
* The CSDMS model page for [[Model:Dakotathon|Dakotathon]]
* [[Configuring Dakota on beach]]
* [[Using Dakota on beach]]
* [[Building_Dakota_on_Ubuntu_12.04_LTS|Building Dakota on Ubuntu 12.04 LTS]]

There is a tool that is similar in concept to the CSDMS Dakota interface: https://github.com/wisdem/pyDAKOTA,
but it's a bit different in what it provides.

==BMI and componentization==

* [[Instructions_for_adding_a_BMI_to_a_model|Instructions]] for adding a BMI to a model
* [[Turning a model into a CSDMS component]]

==Clinics==

* [[CSDMS_2017_annual_meeting_Mark_Piper_-_Eric_Hutton]]
* [[CSDMS_2016_annual_meeting_Eric_Hutton_-_Mark_Piper]]
* [[CSDMS_2016_annual_meeting_Irina_Overeem_-_Mark_Piper]]
* [[CSDMS_2015_annual_meeting_Mark_Piper_-_Eric_Hutton]]
* [[CSDMS_2015_annual_meeting_Eric_Hutton_-_Mark_Piper]]
* [[CSDMS_2015_annual_meeting_Irina_Overeem]]
* [[CSDMS_2014_annual_meeting_Mark_Piper]]

== MediaWiki and the Ask API ==

* An [[Querying_the_CSDMS_model_repository|article]] on using the Ask API to access model metadata from the CSDMS wiki
* A [[Examples_of_querying_the_CSDMS_model_repository|table]] of Ask API examples
* An [[Mpiper_member_count_example|example]] of counting and listing all CSDMS members
* I've had to look up how to [https://www.mediawiki.org/wiki/Help:Signatures add a signature] about 10 times already

== Technology, talks, and tools ==

Software, organizations, discussion groups, etc., that may be useful to CSDMS.

* Pegasus: https://pegasus.isi.edu/
* Popper: http://falsifiable.us/
* RADICAL Cybertools: http://radical-cybertools.github.io/
* OASIS: https://portal.enes.org/oasis
* PEcAn: http://pecanproject.github.io/
* Boulder Earth and Space Science Informatics Group: http://lasp.colorado.edu/home/about/events/bessig/
* Siphon: https://github.com/Unidata/siphon
* Entrofy: https://github.com/dhuppenkothen/entrofy 
* Synda: http://prodiguer.github.io/synda
* Binder: https://mybinder.org/
* Colaboratory: https://colab.research.google.com/notebooks/welcome.ipynb?authuser=1
** Mariela's Anuga example: https://colab.research.google.com/notebook#fileId=1fxJ5Piobcfz904lcVvi3n4O5eBjNGuKH

== Other ==

* [[Glossary]] of CSDMS terms
* My own [[Mpiper_sandbox|sandbox]] page
* My [[Mpiper_images|image gallery]]

==Obsolete==

* [[Installing_components_into_a_WMT_executor|Installing components into a WMT executor]]