Model:RiverMUSE

RiverMUSE

Also known as	River Mussel-Sediment Interaction Model
Model type	Single
Model part of larger framework

Incorporated models or components:

Spatial dimensions	1D
Spatial extent	Reach-Scale
Model domain	Terrestrial, Hydrology, Ecosystems
One-line model description	Simulates freshwater mussel populations' response to changes in suspended sediment
Extended model description	This model simulates the interaction between suspended sediment, chlorophyll-a, and mussel population density. Discharge is the driver; it modulates suspended sediment and its interactions in the system. The model is suitable for simulating mussel densities at-a-site. It was originally developed to test the hypothesis that increased sediment loads in Minnesota Rivers are a plausible cause of observed mussel population declines. The model and results are described in detail in the following paper: https://doi.org/10.1086/684223

Keywords:	mussels, Matlab, suspended sediment, chlorophyll, anthropogenic impact,

Name	Jon Schwenk
Type of contact	Model developer
Institute / Organization	Los Alamos National Laboratory
Postal address 1
Postal address 2
Town / City	Los Alamos
Postal code	87544
State	New Mexico
Country	United States
Email address	jonschwenk@gmail.com
Phone
Fax

Supported platforms	Unix, Linux, Mac OS, Windows
Other platform
Programming language	Matlab
Other program language
Code optimized	Single Processor
Multiple processors implemented
Nr of distributed processors
Nr of shared processors
Start year development	2014
Does model development still take place?	No
If above answer is no, provide end year model development	2015
Code development status	As is, no updates are provided
When did you indicate the 'code development status'?	2020
Model availability	As code
Source code availability (Or provide future intension)	Through CSDMS repository
Source web address
Source csdms web address	https://github.com/csdms-contrib/Mussels
Program license type	GPL v2
Program license type other
Memory requirements
Typical run time	seconds

Describe input parameters	See the readme file.
Input format
Other input format
Describe output parameters	See the readme file.
Output format
Other output format
Pre-processing software needed?	No
Describe pre-processing software
Post-processing software needed?	No
Describe post-processing software
Visualization software needed?	No
If above answer is yes
Other visualization software

Describe processes represented by the model	See the associated published paper: https://doi.org/10.1086/684223
Describe key physical parameters and equations	See the associated published paper: https://doi.org/10.1086/684223 and the readme file for parameter descriptions.
Describe length scale and resolution constraints	Spatial scale is implicit; resolution is n/a.
Describe time scale and resolution constraints	Model constructed for daily time steps, but can be altered with little effort.
Describe any numerical limitations and issues	None known; the model requires very little computational expense.

Describe available calibration data sets	See readme file and the associated published paper: https://doi.org/10.1086/684223. Calibration must be performed on a site-by-site basis; the provided data do not permit calibration for our sites, but we do include the calibrated parameters and explain our methods.
Upload calibration data sets if available:
Describe available test data sets
Upload test data sets if available:
Describe ideal data for testing

Do you have current or future plans for collaborating with other researchers?	This was an effort by a team that no longer works together closely as a whole, although we collaborate in other arenas. As far as I know, there are no current plans to collaborate regarding this model, although it has been shared with various researchers for their projects.

Is there a manual available?	No
Upload manual if available:
Model website if any
Model forum / discussion board

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Featured publication(s)	Year	Model described	Type of Reference	Citations
Hansen, Amy T.; Czuba, Jonathan A.; Schwenk, Jon; Longjas, Anthony; Danesh-Yazdi, Mohammad; Hornbach, Daniel J.; Foufoula-Georgiou, Efi; 2016. Coupling freshwater mussel ecology and river dynamics using a simplified dynamic interaction model. Freshwater Science, 35, 200–215. 10.1086/684223 (View/edit entry)	2016	RiverMUSE	Model overview	26
See more publications of RiverMUSE