Model:RiverMUSE

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RiverMUSE


Metadata

Also known as River Mussel-Sediment Interaction Model
Model type Single
Model part of larger framework
Incorporated models or components:
Spatial dimensions 1D
Spatial extent Reach-Scale
Model domain Terrestrial, Hydrology, Ecosystems
One-line model description Simulates freshwater mussel populations' response to changes in suspended sediment
Extended model description This model simulates the interaction between suspended sediment, chlorophyll-a, and mussel population density. Discharge is the driver; it modulates suspended sediment and its interactions in the system. The model is suitable for simulating mussel densities at-a-site. It was originally developed to test the hypothesis that increased sediment loads in Minnesota Rivers are a plausible cause of observed mussel population declines. The model and results are described in detail in the following paper: https://doi.org/10.1086/684223
Keywords:

mussels, Matlab, suspended sediment, chlorophyll, anthropogenic impact,


First name Jon
Last name Schwenk
Type of contact Model developer
Institute / Organization Los Alamos National Laboratory
Postal address 1
Postal address 2
Town / City Los Alamos
Postal code 87544
State New Mexico
Country United States
Email address jonschwenk@gmail.com
Phone
Fax


Supported platforms Unix, Linux, Mac OS, Windows
Other platform
Programming language Matlab
Other program language
Code optimized Single Processor
Multiple processors implemented
Nr of distributed processors
Nr of shared processors
Start year development 2014
Does model development still take place? No
If above answer is no, provide end year model development 2015
Code development status As is, no updates are provided
When did you indicate the 'code development status'? 2020
Model availability As code
Source code availability
(Or provide future intension)
Through CSDMS repository
Source web address
Source csdms web address https://github.com/csdms-contrib/Mussels
Program license type GPL v2
Program license type other
Memory requirements
Typical run time seconds


Describe input parameters See the readme file.
Input format
Other input format
Describe output parameters See the readme file.
Output format
Other output format
Pre-processing software needed? No
Describe pre-processing software
Post-processing software needed? No
Describe post-processing software
Visualization software needed? No
If above answer is yes
Other visualization software


Describe processes represented by the model See the associated published paper: https://doi.org/10.1086/684223
Describe key physical parameters and equations See the associated published paper: https://doi.org/10.1086/684223 and the readme file for parameter descriptions.
Describe length scale and resolution constraints Spatial scale is implicit; resolution is n/a.
Describe time scale and resolution constraints Model constructed for daily time steps, but can be altered with little effort.
Describe any numerical limitations and issues None known; the model requires very little computational expense.


Describe available calibration data sets See readme file and the associated published paper: https://doi.org/10.1086/684223.

Calibration must be performed on a site-by-site basis; the provided data do not permit calibration for our sites, but we do include the calibrated parameters and explain our methods.

Upload calibration data sets if available:
Describe available test data sets
Upload test data sets if available:
Describe ideal data for testing


Do you have current or future plans for collaborating with other researchers? This was an effort by a team that no longer works together closely as a whole, although we collaborate in other arenas. As far as I know, there are no current plans to collaborate regarding this model, although it has been shared with various researchers for their projects.
Is there a manual available? No
Upload manual if available:
Model website if any
Model forum / discussion board
Comments


This part will be filled out by CSDMS staff

OpenMI compliant No but possible
BMI compliant No but possible
WMT component No but possible
PyMT component
Is this a data component
Can be coupled with:
Model info
Nr. of publications: 1
Total citations: 18
h-index: 1
m-quotient: 0.17
Qrcode RiverMUSE.png
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Introduction

History

References




Nr. of publications: 1
Total citations: 18
h-index: 1
m-quotient: 0.17



Featured publication(s)YearModel describedType of ReferenceCitations
Hansen, Amy T.; Czuba, Jonathan A.; Schwenk, Jon; Longjas, Anthony; Danesh-Yazdi, Mohammad; Hornbach, Daniel J.; Foufoula-Georgiou, Efi; 2016. Coupling freshwater mussel ecology and river dynamics using a simplified dynamic interaction model. Freshwater Science, 35, 200–215. 10.1086/684223
(View/edit entry)
2016 RiverMUSE
Model overview 18
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Input Files

Output Files