Lab-0036

dbSEABED Data Component

Model
dbSEABED Data Component

Duration
1.0 hrs

Updated
2024-04-16

Download
download

Run online using:

1. Jupyter
2. Lab

     

Contributor(s)

    Tian Gan at INSTAAR - University of Colorado Boulder.

Introduction

bmi_dbseabed package (https://github.com/gantian127/bmi_dbseabed) provides a set of functions that allows downloading of the dataset from dbSEABED (https://instaar.colorado.edu/~jenkinsc/dbseabed/), a system for marine substrates datasets across the globe. bmi_dbseabed package also includes a Basic Model Interface (BMI), which converts the dbSEABED datasets into a reusable, plug-and-play data component for the PyMT modeling framework developed by Community Surface Dynamics Modeling System (CSDMS).

Classroom organization
In this lab, you will learn how to use the bmi_dbseabed package to download the marine substrates dataset (e.g., carbonate) for data visualization.

Learning objectives
Skills

• Learn to use an application programming interface (API) to access dbSEABED data.
• Learn to use Basic Model Interface to access dbSEABED data and metadata.

Key concepts

• CSDMS Data Component

Lab notes

This lab can be run on the lab (for educators) and jupyter (for general use) instances of the OpenEarthscape JupyterHub: just click one of the links under the Run online using heading at the top of this page, then run the notebook in the "CSDMS" kernel.

If you don't already have a JupyterHub account, follow the instructions to sign up at https://csdms.colorado.edu/wiki/JupyterHub. If you're an educator, you can get JupyterHub accounts for students--please contact us through the CSDMS Help Desk: https://csdms.github.io/help-desk.

References

• Tucker, G. E., Hutton, E. W. H., Piper, M. D., Campforts, B., Gan, T., Barnhart, K. R., Kettner, A. J., Overeem, I., Peckham, S. D., McCready, L., and Syvitski, J., 2022: CSDMS: a community platform for numerical modeling of Earth surface processes, Geosci. Model Dev., 15, 1413–1439, https://doi.org/10.5194/gmd-15-1413-2022.
• Gan, T., Tucker, G.E., Hutton, E.W.H., Piper, M.D., Overeem, I., Kettner, A.J., Campforts, B., Moriarty, J.M., Undzis, B., Pierce, E., McCready, L., 2024: CSDMS Data Components: data–model integration tools for Earth surface processes modeling. Geosci. Model Dev., 17, 2165–2185. https://doi.org/10.5194/gmd-17-2165-2024