ERSEM-Publications

From CSDMS

ERSEM-Publications

References ERSEM

Total peer and non-peer reviewed publications

161

Journal Articles

139

Books

0

Book sections

2

Reports

0

Thesis

2

Abstracts

2

Code

0

Blogs

6

Miscellaneous

0

Web

0

Preprints

10

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Peer reviewed reference(s) Open Access Status Year Cited
Peer reviewed reference(s) Open Access Status Year Cited
Olher, Júlia P.; Laverick, Jack; Heath, Michael; Speirs, Douglas C.; Gasalla, Maria A.; 2026. Projecting biomass declines in the St Helena marine protected area food web due to climate change. Limnology and Oceanography Letters, 11. 10.1002/lol2.70104
cc-by · publishedVersion
2026 0
Konsta, Katerina; Doxa, Aggeliki; Katsanevakis, Stelios; Mazaris, Antonios D.; 2025. Projected marine heatwaves over the Mediterranean Sea and the network of marine protected areas: a three-dimensional assessment. Climatic Change, 178. 10.1007/s10584-025-03860-4
cc-by · publishedVersion
2025 9
Jardine, J. E.; Holt, J.; Wakelin, S. L.; Katavouta, A.; Partridge, D.; 2025. An Asymmetric Change in Circulation and Nitrate Transports in the Bay of Bengal. Journal of Geophysical Research: Oceans, 130. 10.1029/2024JC021670
cc-by · publishedVersion
2025 4
Wang, Weihang; Liu, Bijin; Guo, Zhen; 2025. Simulation study of red tide occurrence in the coastal waters off Hainan Island based on the FVCOM-FABM-ERSEM model. Marine Environment Science, 44641–652, 663. 10.3724/j.mes.2025-0046
· publishedVersion
2025 0
Qiao, Shouwen; Yu, Yongqing; Wang, Linfeng; Zhu, Mingming; Yang, Yanyan; 2025. Impacts of the water-sediment regulation scheme on nutrient inputs in the Yellow River estuary and assessment of marine purification capacity. Marine Environmental Research, 212107542. 10.1016/j.marenvres.2025.107542
closed
2025 3
Gkanasos, Athanasios; Tsiaras, Kostas; Triantafyllou, George; 2025. A three-dimensional bioenergetic population model of anchovy and sprat in the Black Sea. Hindcast (1960-2020) and sensitivity simulations. Frontiers in Marine Science, 12. 10.3389/fmars.2025.1612255
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2025 0
Potier, M.; Savina-Rolland, M.; Belloeil, P.; Gascuel, D.; Robert, M.; 2025. How will the cumulative effects of fishing and climate change affect the health and resilience of the Celtic Sea ecosystem?. Science of The Total Environment, 969178942. 10.1016/j.scitotenv.2025.178942
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2025 6
Xiao, Rushui; Gao, Guandong; Yang, Dezhou; Su, Ying; Ding, Yang; Bi, Rong; Yan, Shibo; Yin, Baoshu; Liang, Shengkang; Lv, Xianqing; 2024. The impact of extreme precipitation on physical and biogeochemical processes regarding with nutrient dynamics in a semi-closed bay. Science of The Total Environment, 906167599. 10.1016/j.scitotenv.2023.167599
closed
2024 10
Rulent, Julia; James, Molly K.; Rameshwaran, Ponnambalam; Jardine, Jennifer E.; Katavouta, Anna; Wakelin, Sarah; Jayathilaka, Ruchira; Arulananthan, Kanapathipillai; Holt, Jason; Sutton, Mark A.; Artioli, Yuri; 2024. Modelling pollutants transport scenarios based on the X-Press Pearl disaster. Marine Pollution Bulletin, 209117129. 10.1016/j.marpolbul.2024.117129
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2024 4
Chawner, Hannah; Saboya, Eric; Adcock, Karina E.; Arnold, Tim; Artioli, Yuri; Dylag, Caroline; Forster, Grant L.; Ganesan, Anita; Graven, Heather; Lessin, Gennadi; Levy, Peter; Luijkx, Ingrid T.; Manning, Alistair; Pickers, Penelope A.; Rennick, Chris; Rödenbeck, Christian; Rigby, Matthew; 2024. Atmospheric oxygen as a tracer for fossil fuel carbon dioxide: a sensitivity study in the UK. Atmospheric Chemistry and Physics, 244231–4252. 10.5194/acp-24-4231-2024
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2024 6
Schismenou, Eudoxia; Chatzifotis, Stavros; Tsiaras, Kostas; Somarakis, Stylianos; 2024. Anchovy and sardine condition and energy content in the North Aegean Sea (eastern Mediterranean ) in relation to their contrasting reproductive strategies. Journal of Fish Biology, 1051178–1188. 10.1111/jfb.15872
cc-by-nc-nd · publishedVersion
2024 7
Kwon, Young Shin; Kang, Hyoun-Woo; Choi, Dong Han; Seo, Ok Hee; 2024. Dynamics of Carbon Export and Lower Trophic Ecosystems: A Comparative Model Study in the Yellow Sea and Dokdo Waters. Ocean Science Journal, 59. 10.1007/s12601-024-00180-z
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2024 3
Quartly, Graham D.; Aiken, Jim; Brewin, Robert J. W.; Yool, Andrew; 2023. The link between surface and sub-surface chlorophyll-a in the centre of the Atlantic subtropical gyres: a comparison of observations and models. Frontiers in Marine Science, 10. 10.3389/fmars.2023.1197753
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2023 2
Kwon, Young Shin; Rhee, Tae Siek; Bolding, Karsten; 2023. Potential impact of the sea-ice ecosystem to the polar seas biogeochemistry. Frontiers in Marine Science, 10. 10.3389/fmars.2023.1181650
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2023 1
Shi, Shenyang; Xu, Yi; Li, Weiqi; Ge, Jianzhong; 2022. Long-term response of an estuarine ecosystem to drastic nutrients changes in the Changjiang River during the last 59 years: A modeling perspective. Frontiers in Marine Science, 9. 10.3389/fmars.2022.1012127
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2022 11
Somarakis, Stylianos; Giannoulaki, Maria; Markakis, Konstantinos; Tsiaras, Kostas; Schismenou, Eudoxia; Peristeraki, Panagiota; 2021. Ovarian dynamics, batch fecundity and spawning phenology of the lessepsian migrant Etrumeus golanii DiBattista, Randall & Bowen, 2012 (Clupeidae: Dussumieriinae). Mediterranean Marine Science, 22466. 10.12681/mms.27099
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2021 3
Palmer, Stephanie C.J.; Barillé, Laurent; Kay, Susan; Ciavatta, Stefano; Buck, Bela; Gernez, Pierre; 2021. Pacific oyster (Crassostrea gigas) growth modelling and indicators for offshore aquaculture in Europe under climate change uncertainty. Aquaculture, 532736116. 10.1016/j.aquaculture.2020.736116
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2021 20
van Leeuwen, Sm; Salgado, H; Bailey, Jl; Beecham, J; Iriarte, Jl; García-García, L; Thorpe, R; 2021. Climate change, marine resources and a small Chilean community: making the connections. Marine Ecology Progress Series, 680223–246. 10.3354/meps13934
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2021 6
Torres, Ricardo; Artioli, Yuri; Kitidis, Vassilis; Ciavatta, Stefano; Ruiz-Villarreal, Manuel; Shutler, Jamie; Polimene, Luca; Martinez, Victor; Widdicombe, Claire; Woodward, E. Malcolm S.; Smyth, Timothy; Fishwick, James; Tilstone, Gavin H.; 2020. Sensitivity of Modeled CO2 Air–Sea Flux in a Coastal Environment to Surface Temperature Gradients, Surfactants, and Satellite Data Assimilation. Remote Sensing, 122038. 10.3390/rs12122038
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2020 8
Ge, Jianzhong; Torres, Ricardo; Chen, Changsheng; Liu, Jie; Xu, Yi; Bellerby, Richard; Shen, Fang; Bruggeman, Jorn; Ding, Pingxing; 2020. Influence of suspended sediment front on nutrients and phytoplankton dynamics off the Changjiang Estuary: A FVCOM-ERSEM coupled model experiment. Journal of Marine Systems, 204103292. 10.1016/j.jmarsys.2019.103292
cc-by-nc-nd · submittedVersion
2020
Karpouzoglou, Thodoris; Vlaswinkel, Brigitte; van der Molen, Johan; 2020. Effects of large-scale floating (solar photovoltaic) platforms on hydrodynamics and primary production in a coastal sea from a water column model. Ocean Science, 16195–208. 10.5194/os-16-195-2020
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2020 46
Kwon, Young Shin; Kang, Hyoun-Woo; Polimene, Luca; Rhee, Tae Siek; 2020. A marine carbon monoxide (CO) model with a new parameterization of microbial oxidation. Ecological Modelling, 432109203. 10.1016/j.ecolmodel.2020.109203
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2020 4
Maynou, F.; Sabatés, A.; Ramirez-Romero, E.; Catalán, I. A.; Raya, V.; 2020. Future distribution of early life stages of small pelagic fishes in the northwestern Mediterranean. Climatic Change, 161567–589. 10.1007/s10584-020-02723-4
closed
2020 11
Yakubov, Shamil; Wallhead, Philip; Protsenko, Elizaveta; Yakushev, Evgeniy; Pakhomova, Svetlana; Brix, Holger; 2019. A 1-Dimensional Sympagic–Pelagic–Benthic Transport Model (SPBM): Coupled Simulation of Ice, Water Column, and Sediment Biogeochemistry, Suitable for Arctic Applications. Water, 111582. 10.3390/w11081582
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2019 5
Ciavatta, S.; Kay, S.; Brewin, R. J. W.; Cox, R.; Di Cicco, A.; Nencioli, F.; Polimene, L.; Sammartino, M.; Santoleri, R.; Skákala, J.; Tsapakis, M.; 2019. Ecoregions in the Mediterranean Sea Through the Reanalysis of Phytoplankton Functional Types and Carbon Fluxes. Journal of Geophysical Research: Oceans, 1246737–6759. 10.1029/2019JC015128
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2019 25
Borcia, Constantin; 2018. Aspects on the History of Observations and Measurements in the Black Sea Coastal Zone, Rehabilitation Projects and Marine Modeling Issues. Ovidius University Annals of Constanta - Series Civil Engineering, 2031–42. 10.2478/ouacsce-2018-0003
cc-by-nc-nd · publishedVersion
2018
Sankar, S.; Polimene, L.; Marin, L.; Menon, N.N.; Samuelsen, A.; Pastres, R.; Ciavatta, S.; 2018. Sensitivity of the simulated Oxygen Minimum Zone to biogeochemical processes at an oligotrophic site in the Arabian Sea. Ecological Modelling, 37212–23. 10.1016/j.ecolmodel.2018.01.016
closed
2018 12
Aldridge, J. N.; Lessin, G.; Amoudry, L. O.; Hicks, N.; Hull, T.; Klar, J. K.; Kitidis, V.; McNeill, C. L.; Ingels, J.; Parker, E. R.; Silburn, B.; Silva, T.; Sivyer, D. B.; Smith, H. E. K.; Widdicombe, S.; Woodward, E. M. S.; van der Molen, J.; Garcia, L.; Kröger, S.; 2017. Comparing benthic biogeochemistry at a sandy and a muddy site in the Celtic Sea using a model and observations. Biogeochemistry, 135155–182. 10.1007/s10533-017-0367-0
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2017 8
Townhill, Bl; van der Molen, J; Metcalfe, Jd; Simpson, Sd; Farcas, A; Pinnegar, Jk; 2017. Consequences of climate-induced low oxygen conditions for commercially important fish. Marine Ecology Progress Series, 580191–204. 10.3354/meps12291
· submittedVersion
2017 11
Ford, David A.; van der Molen, Johan; Hyder, Kieran; Bacon, John; Barciela, Rosa; Creach, Veronique; McEwan, Robert; Ruardij, Piet; Forster, Rodney; 2017. Observing and modelling phytoplankton community structure in the North Sea. Biogeosciences, 141419–1444. 10.5194/bg-14-1419-2017
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2017 31
Dreano, Denis; Tsiaras, Kostas; Triantafyllou, George; Hoteit, Ibrahim; 2017. Efficient ensemble forecasting of marine ecology with clustered 1D models and statistical lateral exchange: application to the Red Sea. Ocean Dynamics, 67935–947. 10.1007/s10236-017-1065-0
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2017 8
Brewin, Robert J. W.; Ciavatta, Stefano; Sathyendranath, Shubha; Jackson, Thomas; Tilstone, Gavin; Curran, Kieran; Airs, Ruth L.; Cummings, Denise; Brotas, Vanda; Organelli, Emanuele; Dall'Olmo, Giorgio; Raitsos, Dionysios E.; 2017. Uncertainty in Ocean-Color Estimates of Chlorophyll for Phytoplankton Groups. Frontiers in Marine Science, 4. 10.3389/fmars.2017.00104
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2017 103
Tsiaras, Kostas P.; Christodoulaki, Sylvia; Petihakis, George; Frangoulis, Constantin; Triantafyllou, George; 2017. Model Simulations of a Mesocosm Experiment Investigating the Response of a Low Nutrient Low Chlorophyll (LNLC) Marine Ecosystem to Atmospheric Deposition Events. Frontiers in Marine Science, 4. 10.3389/fmars.2017.00120
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2017 19
van der Molen, Johan; Ruardij, Piet; Greenwood, Naomi; 2017. A 3D SPM model for biogeochemical modelling, with application to the northwest European continental shelf. Journal of Sea Research, 12763–81. 10.1016/j.seares.2016.12.003
other-oa · publishedVersion
2017 23
Butenschön, Momme; Clark, James; Aldridge, John N.; Allen, Julian Icarus; Artioli, Yuri; Blackford, Jeremy; Bruggeman, Jorn; Cazenave, Pierre; Ciavatta, Stefano; Kay, Susan; Lessin, Gennadi; van Leeuwen, Sonja; van der Molen, Johan; de Mora, Lee; Polimene, Luca; Sailley, Sevrine; Stephens, Nicholas; Torres, Ricardo; 2016. ERSEM 15.06: a generic model for marine biogeochemistry and the ecosystem dynamics of the lower trophic levels. Geoscientific Model Development, 91293–1339. 10.5194/gmd-9-1293-2016
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2016 302
van Leeuwen, S. M.; Le Quesne, W. F.; Parker, E. R.; 2016. Potential future fisheries yields in shelf waters: a model study of the effects of climate change and ocean acidification. Biogeosciences, 13441–454. 10.5194/bg-13-441-2016
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2016 19
de Mora, L.; Butenschön, M.; Allen, J. I.; 2016. The assessment of a global marine ecosystem model on the basis of emergent properties and ecosystem function: a case study with ERSEM. Geoscientific Model Development, 959–76. 10.5194/gmd-9-59-2016
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2016 38
Schismenou, Eudoxia; Palmer, Miquel; Giannoulaki, Marianna; Alvarez, Itziar; Tsiaras, Kostas; Triantafyllou, George; Somarakis, Stylianos; 2016. Seasonal changes in otolith increment width trajectories and the effect of temperature on the daily growth rate of young sardines. Fisheries Oceanography, 25362–372. 10.1111/fog.12158
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2016 24
Beecham, Jonathan; Bruggeman, Jorn; Aldridge, John; Mackinson, Steven; 2016. Couplerlib : a metadata-driven library for the integration of multiple models of higher and lower trophic level marine systems with inexact functional group matching. Geoscientific Model Development, 9947–964. 10.5194/gmd-9-947-2016
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2016 3
Solé, Jordi; García-Ladona, Emilio; Piera, Jaume; Estrada, Marta; 2016. Parameter constraints of grazing response functions. Implications for phytoplankton bloom initiation. Scientia Marina, 80129–137. 10.3989/scimar.04271.18A
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2016 1
Lee, Soonmi; Yoo, Sinjae; 2016. Interannual variability of the phytoplankton community by the changes in vertical mixing and atmospheric deposition in the Ulleung Basin, East Sea: A modelling study. Ecological Modelling, 32231–47. 10.1016/j.ecolmodel.2015.11.012
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2016 10
van der Molen, Johan; Ruardij, Piet; Greenwood, Naomi; 2016. Potential environmental impact of tidal energy extraction in the Pentland Firth at large spatial scales: results of a biogeochemical model. Biogeosciences, 132593–2609. 10.5194/bg-13-2593-2016
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2016 60
Sun, Peng; Xue, Ruiyang; Zhang, Wang; Zada, Imran; Liu, Qinglei; Gu, Jiajun; Su, Huilan; Zhang, Zhijian; Zhang, Jianzhong; Zhang, Di; 2016. Photocatalyst of organic pollutants decomposition: TiO 2 /glass fiber cloth composites. Catalysis Today, 2742–7. 10.1016/j.cattod.2016.04.036
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2016 36
Kalaroni, S.; Tsiaras, K.; Petihakis, G.; Hoteit, I.; Economou-Amilli, A.; Triantafyllou, G.; 2016. Data assimilation of depth-distributed satellite chlorophyll-α in two Mediterranean contrasting sites. Journal of Marine Systems, 16040–53. 10.1016/j.jmarsys.2016.03.018
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2016 9
Trifonova, Neda; Kenny, Andrew; Maxwell, David; Duplisea, Daniel; Fernandes, Jose; Tucker, Allan; 2015. Spatio-temporal Bayesian network models with latent variables for revealing trophic dynamics and functional networks in fisheries ecology. Ecological Informatics, 30142–158. 10.1016/j.ecoinf.2015.10.003
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2015 67
van Leeuwen, Sonja; Tett, Paul; Mills, David; van der Molen, Johan; 2015. Stratified and nonstratified areas in the N orth S ea: Long‐term variability and biological and policy implications. Journal of Geophysical Research: Oceans, 1204670–4686. 10.1002/2014JC010485
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2015 147
Pinna, Adriano; Pezzolesi, Laura; Pistocchi, Rossella; Vanucci, Silvana; Ciavatta, Stefano; Polimene, Luca; Dam, Hans G.; 2015. Modelling the Stoichiometric Regulation of C-Rich Toxins in Marine Dinoflagellates. PLOS ONE, 10e0139046. 10.1371/journal.pone.0139046
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2015 22
Wakelin, Sarah L.; Artioli, Yuri; Butenschön, Momme; Allen, J. Icarus; Holt, Jason T.; 2015. Modelling the combined impacts of climate change and direct anthropogenic drivers on the ecosystem of the northwest European continental shelf. Journal of Marine Systems, 15251–63. 10.1016/j.jmarsys.2015.07.006
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2015 53
Politikos, D.; Somarakis, S.; Tsiaras, K.P.; Giannoulaki, M.; Petihakis, G.; Machias, A.; Triantafyllou, G.; 2015. Simulating anchovy’s full life cycle in the northern Aegean Sea (eastern Mediterranean): A coupled hydro-biogeochemical–IBM model. Progress in Oceanography, 138399–416. 10.1016/j.pocean.2014.09.002
closed
2015 38
Queirós, Ana M.; Bruggeman, Jorn; Stephens, Nicholas; Artioli, Yuri; Butenschön, Momme; Blackford, Jeremy C.; Widdicombe, Stephen; Allen, J. Icarus; Somerfield, Paul J.; 2015. Placing biodiversity in ecosystem models without getting lost in translation. Journal of Sea Research, 9883–90. 10.1016/j.seares.2014.10.004
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2015 18
Polimene, L.; Mitra, A.; Sailley, S.F.; Ciavatta, S.; Widdicombe, C.E.; Atkinson, A.; Allen, J.I.; 2015. Decrease in diatom palatability contributes to bloom formation in the Western English Channel. Progress in Oceanography, 137484–497. 10.1016/j.pocean.2015.04.026
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2015 24
Collingridge, Kate; van der Molen, Johan; Pitois, Sophie; 2014. Modelling risk areas in the North Sea for blooms of the invasive comb jelly Mnemiopsis leidyi A. Agassiz, 1865. Aquatic Invasions, 921–36. 10.3391/ai.2014.9.1.02
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2014 20
van der Molen, Johan; Smith, Helen C.M.; Lepper, Paul; Limpenny, Sian; Rees, Jon; 2014. Predicting the large-scale consequences of offshore wind turbine array development on a North Sea ecosystem. Continental Shelf Research, 8560–72. 10.1016/j.csr.2014.05.018
cc-by-nc-nd · submittedVersion
2014 76
Triantafyllou, G.; Yao, F.; Petihakis, G.; Tsiaras, K. P.; Raitsos, D. E.; Hoteit, I.; 2014. Exploring the Red Sea seasonal ecosystem functioning using a three-dimensional biophysical model. Journal of Geophysical Research: Oceans, 1191791–1811. 10.1002/2013JC009641
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2014 76
Artioli, Y.; Blackford, J. C.; Nondal, G.; Bellerby, R. G. J.; Wakelin, S. L.; Holt, J. T.; Butenschön, M.; Allen, J. I.; 2014. Heterogeneity of impacts of high CO 2 on the North Western European Shelf. Biogeosciences, 11601–612. 10.5194/bg-11-601-2014
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2014 67
Schismenou, E; Giannoulaki, M; Tsiaras, K; Lefkaditou, E; Triantafyllou, G; Somarakis, S; 2014. Disentangling the effects of inherent otolith growth and model-simulated ecosystem parameters on the daily growth rate of young anchovies. Marine Ecology Progress Series, 515227–237. 10.3354/meps10958
· publishedVersion
2014 19
Marques, Gonçalo M.; Mateus, Marcos; Domingos, Tiago; 2014. Can we reach consensus between marine ecological models and DEB theory? A look at primary producers. Journal of Sea Research, 9492–104. 10.1016/j.seares.2014.09.007
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2014 7
van der Molen, Johan; Aldridge, John N.; Coughlan, Clare; Parker, Eleanor Ruth; Stephens, David; Ruardij, Piet; 2013. Modelling marine ecosystem response to climate change and trawling in the North Sea. Biogeochemistry, 113213–236. 10.1007/s10533-012-9763-7
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2013 70
Painting, Suzanne J.; Forster, Rodney M.; 2013. Marine Ecosystem Connections: essential indicators of healthy, productive and biologically diverse seas. Biogeochemistry, 1131–7. 10.1007/s10533-013-9838-0
· publishedVersion
2013 15
Triantafyllou, G.; Hoteit, I.; Luo, X.; Tsiaras, K.; Petihakis, G.; 2013. Assessing a robust ensemble-based Kalman filter for efficient ecosystem data assimilation of the Cretan Sea. Journal of Marine Systems, 12590–100. 10.1016/j.jmarsys.2012.12.006
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2013 28
Wakelin, S. L.; Holt, J. T.; Blackford, J. C.; Allen, J. I.; Butenschön, M.; Artioli, Y.; 2012. Modeling the carbon fluxes of the northwest European continental shelf: Validation and budgets. Journal of Geophysical Research: Oceans, 117. 10.1029/2011JC007402
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2012 96
Teal, Lorna R.; van Hal, Ralf; van Kooten, Tobias; Ruardij, Piet; Rijnsdorp, Adriaan D.; 2012. Bio‐energetics underpins the spatial response of North Sea plaice ( Pleuronectes platessa L.) and sole ( Solea solea L.) to climate change. Global Change Biology, 183291–3305. 10.1111/j.1365-2486.2012.02795.x
· acceptedVersion
2012 103
Petihakis, G.; Triantafyllou, G.; Korres, G.; Tsiaras, K.; Theodorou, A.; 2012. Ecosystem modelling: Towards the development of a management tool for a marine coastal system part-II, ecosystem processes and biogeochemical fluxes. Journal of Marine Systems, 94S49–S64. 10.1016/j.jmarsys.2011.11.006
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2012 19
Sykes, Peter A.; Barciela, Rosa M.; 2012. Assessment and development of a sediment model within an operational system. Journal of Geophysical Research: Oceans, 117. 10.1029/2011JC007420
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2012 19
Elkalay, K; Khalil, K.; Thomas, H.; Bozec, Y.;Ruardij, P.;de Baar, H.; 2012. Biogeochemical 1D ERSEM Ecosystem Model Applied to Recent Carbon Dioxide and Nutrient Data in the North Sea. , 25275-294. 10.1016/B978-0-444-59396-2.00017-1
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2012 2
Korres, G.; Triantafyllou, G.; Petihakis, G.; Raitsos, D.E.; Hoteit, I.; Pollani, A.; Colella, S.; Tsiaras, K.; 2012. A data assimilation tool for the Pagasitikos Gulf ecosystem dynamics: Methods and benefits. Journal of Marine Systems, 94S102–S117. 10.1016/j.jmarsys.2011.11.004
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2012 32
Mateus, M.; 2012. A process-oriented model of pelagic biogeochemistry for marine systems. Part I: Model description. Journal of Marine Systems, 94S78–S89. 10.1016/j.jmarsys.2011.11.008
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2012 18
Holt, J.; Butenschön, M.; Wakelin, S. L.; Artioli, Y.; Allen, J. I.; 2012. Oceanic controls on the primary production of the northwest European continental shelf: model experiments under recent past conditions and a potential future scenario. Biogeosciences, 997–117. 10.5194/bg-9-97-2012
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2012 139
Artioli, Yuri; Blackford, Jeremy C.; Butenschön, Momme; Holt, Jason T.; Wakelin, Sarah L.; Thomas, Helmuth; Borges, Alberto V.; Allen, J. Icarus; 2012. The carbonate system in the North Sea: Sensitivity and model validation. Journal of Marine Systems, 1021–13. 10.1016/j.jmarsys.2012.04.006
other-oa · submittedVersion
2012 130
Shutler, J.D.; Smyth, T.J.; Saux-Picart, S.; Wakelin, S.L.; Hyder, P.; Orekhov, P.; Grant, M.G.; Tilstone, G.H.; Allen, J.I.; 2011. Evaluating the ability of a hydrodynamic ecosystem model to capture inter- and intra-annual spatial characteristics of chlorophyll-a in the north east Atlantic. Journal of Marine Systems, 88169–182. 10.1016/j.jmarsys.2011.03.013
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2011 31
Staneva, Joanna; Kourafalou, Villy; Tsiaras, Kostas; 2010. Seasonal and Interannual Variability of the North-Western Black Sea Ecosystem. Terrestrial, Atmospheric and Oceanic Sciences, 21163. 10.3319/TAO.2009.06.08.03(IWNOP)
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2010 9
Trancoso, Ana Rosa; Braunschweig, Frank; Chambel Leitão, Pedro; Obermann, Matthias; Neves, Ramiro; 2009. An advanced modelling tool for simulating complex river systems. Science of The Total Environment, 4073004–3016. 10.1016/j.scitotenv.2009.01.015
closed
2009 61
Allen, J.I.; Somerfield, P.J.; 2009. A multivariate approach to model skill assessment. Journal of Marine Systems, 7683–94. 10.1016/j.jmarsys.2008.05.009
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2009 51
Lewis, K.; Allen, J.I.; 2009. Validation of a hydrodynamic-ecosystem model simulation with time-series data collected in the western English Channel. Journal of Marine Systems, 77296–311. 10.1016/j.jmarsys.2007.12.013
closed
2009 39
Petihakis, G.; Triantafyllou, G.; Tsiaras, K.; Korres, G.; Pollani, A.; Hoteit, I.; 2009. Eastern Mediterranean biogeochemical flux model – Simulations of the pelagic ecosystem. Ocean Science, 529–46. 10.5194/os-5-29-2009
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2009 26
Aveytua-Alcázar, Leslie; Camacho-Ibar, Victor F.; Souza, Alejandro J.; Allen, J.I.; Torres, Ricardo; 2008. Modelling Zostera marina and Ulva spp. in a coastal lagoon. Ecological Modelling, 218354–366. 10.1016/j.ecolmodel.2008.07.019
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2008 51
Nunneri, Corinna; Lenhart, Hermann J.; Burkhard, Benjamin; Windhorst, Wilhelm; 2008. Ecological risk as a tool for evaluating the effects of offshore wind farm construction in the North Sea. Regional Environmental Change, 831–43. 10.1007/s10113-008-0045-9
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2008 27
Krivtsov, V.; Howarth, M.J.; Jones, S.E.; Souza, A.J.; Jago, C.F.; 2008. Monitoring and modelling of the Irish Sea and Liverpool Bay: An overview and an SPM case study. Ecological Modelling, 21237–52. 10.1016/j.ecolmodel.2007.10.038
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2008 30
Siddorn, John R.; Allen, J. Icarus; Blackford, Jerry C.; Gilbert, Francis J.; Holt, Jason T.; Holt, Martin W.; Osborne, Jeff P.; Proctor, Roger; Mills, David K.; 2007. Modelling the hydrodynamics and ecosystem of the North-West European continental shelf for operational oceanography. Journal of Marine Systems, 65417–429. 10.1016/j.jmarsys.2006.01.018
closed
2007 85
Allen, J. Icarus; Holt, Jason T.; Blackford, Jerry; Proctor, Roger; 2007. Error quantification of a high-resolution coupled hydrodynamic-ecosystem coastal-ocean model: Part 2. Chlorophyll-a, nutrients and SPM. Journal of Marine Systems, 68381–404. 10.1016/j.jmarsys.2007.01.005
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2007 158
Nunneri, Corinna; Windhorst, Wilhelm; Kerry Turner, R.; Lenhart, Hermann; 2007. Nutrient emission reduction scenarios in the North Sea: An abatement cost and ecosystem integrity analysis. Ecological Indicators, 7776–792. 10.1016/j.ecolind.2006.09.002
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2007 15
Petihakis, G.; Smith, C. J.; Triantafyllou, G.; Sourlantzis, G.; Papadopoulou, K-N.; Pollani, A.; Korres, G.; 2007. Scenario testing of fisheries management strategies using a high resolution ERSEM–POM ecosystem model. ICES Journal of Marine Science, 641627–1640. 10.1093/icesjms/fsm161
other-oa · submittedVersion
2007 18
Vichi, M.; Pinardi, N.; Masina, S.; 2007. A generalized model of pelagic biogeochemistry for the global ocean ecosystem. Part I: Theory. Journal of Marine Systems, 6489–109. 10.1016/j.jmarsys.2006.03.006
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2007 259
Kohlmeier, C.; Ebenhöh, W.; 2007. Modelling the ecosystem dynamics and nutrient cycling of the Spiekeroog back barrier system with a coupled Euler–Lagrange model on the base of ERSEM. Ecological Modelling, 202297–310. 10.1016/j.ecolmodel.2006.10.017
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2007 25
Carniel, Sandro; Vichi, Marcello; Sclavo, Mauro; 2007. Sensitivity of a coupled physical–biological model to turbulence: high-frequency simulations in a northern Adriatic station. Chemistry and Ecology, 23157–175. 10.1080/02757540701197903
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2007 14
Allen, Ji; Clarke, Kr; 2007. Effects of demersal trawling on ecosystem functioning in the North Sea: a modelling study. Marine Ecology Progress Series, 33663–75. 10.3354/meps336063
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2007 68
Torres, R.; Allen, J.I.; Figueiras, F.G.; 2006. Sequential data assimilation in an upwelling influenced estuary. Journal of Marine Systems, 60317–329. 10.1016/j.jmarsys.2006.02.001
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2006 35
Solé, Jordi; Estrada, Marta; Garcia-Ladona, Emilio; 2006. Biological control of harmful algal blooms: A modelling study. Journal of Marine Systems, 61165–179. 10.1016/j.jmarsys.2005.06.004
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2006 39
Wang, Xiulin; Han, Xiurong; Shi, Xiaoyong; Zhu, Chenjian; Sun, Xia; Zhang, Chuansong; 2006. Kinetics of Nutrient Uptake and Release by Phytoplankton in East China Sea: Model and Mesocosm Experiments. Hydrobiologia, 563297–311. 10.1007/s10750-006-0019-1
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2006 7
Polimene, L.; Pinardi, N.; Zavatarelli, M.; Colella, S.; 2006. The Adriatic Sea ecosystem seasonal cycle: Validation of a three‐dimensional numerical model. Journal of Geophysical Research: Oceans, 111. 10.1029/2005JC003260
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2006 64
Flynn, Kevin J.; 2006. Reply to Horizons Article ‘Plankton functional type modelling: running before we can walk’ Anderson (2005): II. Putting trophic functionality into plankton functional types. Journal of Plankton Research, 28873–875. 10.1093/plankt/fbl015
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2006 48
Hofmann, J.; Behrendt, H.; Gilbert, A.; Janssen, R.; Kannen, A.; Kappenberg, J.; Lenhart, H.; Lise, W.; Nunneri, C.; Windhorst, W.; 2005. Catchment–coastal zone interaction based upon scenario and model analysis: Elbe and the German Bight case study. Regional Environmental Change, 554–81. 10.1007/s10113-004-0082-y
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2005 35
Wirtz, Kai W.; Wiltshire, Karen; 2005. Long-term shifts in marine ecosystem functioning detected by inverse modeling of the Helgoland Roads time-series. Journal of Marine Systems, 56262–282. 10.1016/j.jmarsys.2004.11.002
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2005 38
George, Triantafyllou; Ibrahim, Hoteit; Gerassimos, Korres; George, Petihakis; 2005. Ecosystem Modeling and Data Assimilation of Physical-Biogeochemical processes in Shelf and Regional Areas of the Mediterranean Sea. Applied Numerical Analysis & Computational Mathematics, 2262–280. 10.1002/anac.200410041
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2005 15
Hoteit, I.; Triantafyllou, G.; Petihakis, G.; 2005. Efficient data assimilation into a complex, 3-D physical-biogeochemical model using partially-local Kalman filters. Annales Geophysicae, 233171–3185. 10.5194/angeo-23-3171-2005
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2005 34
Vermaat, Jan; Salomons, Wim; Bouwer, Laurens; Turner, Kerry; Windhorst, Wilhelm; Colijn, Franciscus; Kabuta, Saa; Laane, Remi P.W.M.; Lenhart, Hermann-Josef; 2005. Defining a good ecological status of coastal waters — a case study for the Elbe plume. , 59–74. [1]
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2005 17
Fulton, Elizabeth A; Smith, Anthony D.M; Johnson, Craig R; 2004. Biogeochemical marine ecosystem models I: IGBEM—a model of marine bay ecosystems. Ecological Modelling, 174267–307. 10.1016/j.ecolmodel.2003.09.027
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2004 132
Blackford, J.C.; Allen, J.I.; Gilbert, F.J.; 2004. Ecosystem dynamics at six contrasting sites: a generic modelling study. Journal of Marine Systems, 52191–215. 10.1016/j.jmarsys.2004.02.004
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2004 290
Archer, Stephen D; Gilbert, Francis J; Allen, J Icarus; Blackford, Jerry; Nightingale, Philip D; 2004. Modelling of the seasonal patterns of dimethylsulphide production and fate during 1989 at a site in the North Sea. Canadian Journal of Fisheries and Aquatic Sciences, 61765–787. 10.1139/f04-028
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2004 31
Ibrahim, Hoteit; George, Triantafyllou; George, Petihakis; 2004. Towards a data assimilation system for the Cretan Sea ecosystem using a simplified Kalman filter. Journal of Marine Systems, 45159–171. 10.1016/j.jmarsys.2003.11.003
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2004 24
Vichi, M.; Ruardij, P.; Baretta, J. W.; 2004. Link or sink: a modelling interpretation of the open Baltic biogeochemistry. Biogeosciences, 179–100. 10.5194/bg-1-79-2004
cc-by · publishedVersion
2004 16
Allen, J.Icarus; Siddorn, John R.; Blackford, Jerry C.; Gilbert, Francis J.; 2004. Turbulence as a control on the microbial loop in a temperate seasonally stratified marine systems model. Journal of Sea Research, 521–20. 10.1016/j.seares.2003.09.004
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2004 53
Allen, J. I.; Eknes, M.; Evensen, G.; 2003. An Ensemble Kalman Filter with a complex marine ecosystem model: hindcasting phytoplankton in the Cretan Sea. Annales Geophysicae, 21399–411. 10.5194/angeo-21-399-2003
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2003 100
Hoteit, I.; Triantafyllou, G.; Petihakis, G.; Allen, J. I.; 2003. A singular evolutive extended Kalman filter to assimilate real in situ data in a 1-D marine ecosystem model. Annales Geophysicae, 21389–397. 10.5194/angeo-21-389-2003
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2003 41
Triantafyllou, G.; Hoteit, I.; Petihakis, G.; 2003. A singular evolutive interpolated Kalman filter for efficient data assimilation in a 3-D complex physical–biogeochemical model of the Cretan Sea. Journal of Marine Systems, 40213–231. 10.1016/S0924-7963(03)00019-8
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2003 32
Moll, Andreas; Radach, Günther; 2003. Review of three-dimensional ecological modelling related to the North Sea shelf system. Progress in Oceanography, 57175–217. 10.1016/S0079-6611(03)00067-3
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2003 175
Vichi, M; May, W; Navarra, A; 2003. Response of a complex ecosystem model of the northern Adriatic Sea to a regional climate change scenario. Climate Research, 24141–159. 10.3354/cr024141
· publishedVersion
2003 51
Lee, Jae-Young; Tett, Paul; Jones, Ken; Jones, Sarah; Luyten, Patrick; Smith, Claire; Wild-Allen, Karen; 2002. The PROWQM physical–biological model with benthic–pelagic coupling applied to the northern North Sea. Journal of Sea Research, 48287–331. 10.1016/S1385-1101(02)00182-X
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2002 47
Blackford, J.C; Burkill, P.H; 2002. Planktonic community structure and carbon cycling in the Arabian Sea as a result of monsoonal forcing: the application of a generic model. Journal of Marine Systems, 36239–267. 10.1016/S0924-7963(02)00182-3
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2002 49
Allen, J.I.; 2002. Simulating the spring phytoplankton bloom in the Humber Plume (UK) with a variable phytoplankton carbon: chlorophyll-a model. , 66497–504. [2]
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2002 4
Blackford, J.C.; 2002. The Influence of Microphytobenthos on the Northern Adriatic Ecosystem: A Modelling Study. Estuarine, Coastal and Shelf Science, 55109–123. 10.1006/ecss.2001.0890
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2002 58
Köhler, Peter; Wirtz, Kai W.; 2002. Linear understanding of a huge aquatic ecosystem model using a group-collecting sensitivity analysis. Environmental Modelling & Software, 17613–625. 10.1016/S1364-8152(02)00022-1
closed
2002 19
Petihakis, George; Triantafyllou, George; Allen, Icarus J; Hoteit, Ibrahim; Dounas, Costas; 2002. Modelling the spatial and temporal variability of the Cretan Sea ecosystem. Journal of Marine Systems, 36173–196. 10.1016/S0924-7963(02)00186-0
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2002 68
Lenhart, Hermann-J.; 2001. Effects of river nutrient load reduction on the eutrophication of the North Sea, simulated with the ecosystem model ERSEM. Senckenbergiana maritima, 31299–311. 10.1007/BF03043038
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2001 24
Wirtz, Kai W.; 2001. Strategies for Transforming Fine Scale Knowledge to Management Usability. Marine Pollution Bulletin, 43209–214. 10.1016/S0025-326X(01)00085-6
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2001 8
Triantafyllou, G; 2000. Temporal variations in benthic communities and their response to physicochemical forcing: a numerical approach. ICES Journal of Marine Science, 571507–1516. 10.1006/jmsc.2000.0923
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2000 20
Skogen, Morten D.; Moll, Andreas; 2000. Interannual variability of the North Sea primary production: comparison from two model studies. Continental Shelf Research, 20129–151. 10.1016/S0278-4343(99)00069-2
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2000 66
Moll, A; 2000. Assessment of three-dimensional physical-biological ECOHAM1 simulations by quantified validation for the North Sea with ICES and ERSEM data. ICES Journal of Marine Science, 571060–1068. 10.1006/jmsc.2000.0590
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2000 27
Vichi, M.; Zavatarelli, M.; Pinardi, N.; 1998. Seasonal modulation of microbially mediated carbon fluxes in the northern Adriatic Sea — a model study. Fisheries Oceanography, 7182–190. 10.1046/j.1365-2419.1998.00082.x
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1998 35
Allen, J.I.; Blackford, J.C.; Radford, P.J.; 1998. An 1-D vertically resolved modelling study of the ecosystem dynamics of the middle and southern Adriatic Sea. Journal of Marine Systems, 18265–286. 10.1016/S0924-7963(98)00015-3
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1998 65
Allen, J.I.; 1997. A modelling study of ecosystem dynamics and nutrient cycling in the Humber plume, UK. Journal of Sea Research, 38333–359. 10.1016/S1385-1101(97)00050-6
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1997 39
Baretta-Bekker, J.G.; Baretta, J.W.; Ebenhöh, W.; 1997. Microbial dynamics in the marine ecosystem model ERSEM II with decoupled carbon assimilation and nutrient uptake. Journal of Sea Research, 38195–211. 10.1016/S1385-1101(97)00052-X
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1997 174
Lenhart, Hermann J.; Radach, Günther; Ruardij, Piet; 1997. The effects of river input on the ecosystem dynamics in the continental coastal zone of the North Sea using ERSEM. Journal of Sea Research, 38249–274. 10.1016/S1385-1101(97)00049-X
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1997 75
Pätsch, Johannes; Radach, Günther; 1997. Long-term simulation of the eutrophication of the North Sea: temporal development of nutrients, chlorophyll and primary production in comparison to observations. Journal of Sea Research, 38275–310. 10.1016/S1385-1101(97)00051-8
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1997 127
Lenhart, Hermann-J.; Pohlmann, Thomas; 1997. The ICES-boxes approach in relation to results of a North Sea circulation model. Tellus A: Dynamic Meteorology and Oceanography, 49139. 10.3402/tellusa.v49i1.12217
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1997 59
Blackford, J.C.; 1997. An analysis of benthic biological dynamics in a North Sea ecosystem model. Journal of Sea Research, 38213–230. 10.1016/S1385-1101(97)00044-0
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1997 99
Heath, M.; Scott, B.; Bryant, A.D.; 1997. Modelling the growth of herring from four different stocks in the North Sea. Journal of Sea Research, 38413–436. 10.1016/S1385-1101(97)00045-2
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1997 79
Ebenhoh, W.; Baretta-Bekker, J.G.; Baretta, J.W.; 1997. The primary production module in the marine ecosystem model ERSEM II, with emphasis on the light forcing. Journal of Sea Research, 38173–193. 10.1016/S1385-1101(97)00043-9
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1997 120
Radach, Günther; Pätsch, Johannes; 1997. Climatological annual cycles of nutrients and chlorophyll in the North Sea. Journal of Sea Research, 38231–248. 10.1016/S1385-1101(97)00048-8
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1997 53
Ruardij, Piet; Van Haren, Hans; Ridderinkhof, Herman; 1997. The impact of thermal stratification on phytoplankton and nutrient dynamics in shelf seas: a model study. Journal of Sea Research, 38311–331. 10.1016/S1385-1101(97)00042-7
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1997 79
Radach, Günther; Lenhart, Hermann J.; 1995. Nutrient dynamics in the North Sea: Fluxes and budgets in the water column derived from ERSEM. Netherlands Journal of Sea Research, 33301–335. 10.1016/0077-7579(95)90051-9
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1995 78
Bryant, A.D.; Heath, M.R.; Broekhuizen, N.; Ollason, J.G.; Gurney, W.S.C.; Greenstreet, S.P.R.; 1995. Modelling the predation, growth and population dynamics of fish within a spatially-resolved shelf-sea ecosystem model. Netherlands Journal of Sea Research, 33407–421. 10.1016/0077-7579(95)90055-1
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1995 46
Ruardij, Piet; Van Raaphorst, Wim; 1995. Benthic nutrient regeneration in the ERSEM ecosystem model of the North Sea. Netherlands Journal of Sea Research, 33453–483. 10.1016/0077-7579(95)90057-8
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1995 123
Blackford, J.C.; Radford, P.J.; 1995. A structure and methodology for marine ecosystem modelling. Netherlands Journal of Sea Research, 33247–260. 10.1016/0077-7579(95)90048-9
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1995 42
Ebenhöh, W.; Kohlmeier, C.; Radford, P.J.; 1995. The benthic biological submodel in the European regional seas ecosystem model. Netherlands Journal of Sea Research, 33423–452. 10.1016/0077-7579(95)90056-X
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1995 111
Lenhart, Hermann J.; Radach, Günther; Backhaus, Jan O.; Pohlmann, Thomas; 1995. Simulations of the north sea circulation, its variability, and its implementation as hydrodynamical forcing in ERSEM. Netherlands Journal of Sea Research, 33271–299. 10.1016/0077-7579(95)90050-0
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1995 76
Baretta-Bekker, J.G.; Baretta, J.W.; Koch Rasmussen, E.; 1995. The microbial food web in the European Regional Seas Ecosystem Model. Netherlands Journal of Sea Research, 33363–379. 10.1016/0077-7579(95)90053-5
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1995 130
Broekhuizen, N.; Heath, M.R.; Hay, S.J.; Gurney, W.S.C.; 1995. Modelling the dynamics of the North Sea's Mesozooplankton. Netherlands Journal of Sea Research, 33381–406. 10.1016/0077-7579(95)90054-3
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1995 100
Baretta, J.W.; Ebenhöh, W.; Ruardij, P.; 1995. The European regional seas ecosystem model, a complex marine ecosystem model. Netherlands Journal of Sea Research, 33233–246. 10.1016/0077-7579(95)90047-0
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1995 581
Varela, Ramiro A.; Cruzado, Antonio; Gabaldón, Jesús E.; 1995. Modelling primary production in the North Sea using the European Regional Seas Ecosystem Model. Netherlands Journal of Sea Research, 33337–361. 10.1016/0077-7579(95)90052-7
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1995 77
Baretta, J.W.; Ruardij, P.; Vested, H.J.; Baretta-Bekker, J.G.; 1994. Eutrophication modelling of the North Sea: two different approaches. Ecological Modelling, 75471–483. 10.1016/0304-3800(94)90041-8
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1994 14



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Nr. of publications: 158
Total citations: 7369
h-index: 50
m-quotient: 1.52

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