Model:FVCOM: Difference between revisions

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{{Documentation model
{{Documentation model
|Provide key papers on model if any=Key Papers:
|Provide key papers on model if any=Key Papers:
*’’’Chen, C. S., Liu, H. D., Beardsey, R. C., 2003. An Unstructured Grid, Finite-Volume, Three-Dimensional, Primitive Equations Ocean Model: Application to Coastal Ocean and Estuaries. Journal of Atmospheric and Oceanic Technology, 20, 159~186, Doi: ([http://dx.doi.org/10.1175/1520-0426(2003)020<0159:AUGFVT>2.0.CO;2 10.1175/1520-0426(2003)020<0159:AUGFVT>2.0.CO;2])
*'''Chen, C. S., Liu, H. D., Beardsey, R. C., 2003. An Unstructured Grid, Finite-Volume, Three-Dimensional, Primitive Equations Ocean Model: Application to Coastal Ocean and Estuaries. Journal of Atmospheric and Oceanic Technology, 20, 159~186, Doi: ([http://dx.doi.org/10.1175/1520-0426(2003)020<0159:AUGFVT>2.0.CO;2 10.1175/1520-0426(2003)020<0159:AUGFVT>2.0.CO;2])'''
*’’’Chen C. S., Huang, H. S., Beardsley, R. C., Liu, H. D., Xu, Q. C., Cowles, G., 2007. A finite volume numerical approach for coastal ocean circulation studies: Comparisons with finite difference models. Journal of Geophysical Research, 12, C03018, Doi: ([http://dx.doi.org/10.1029/2006JC003485 10.1029/2006JC003485]).
 
*’’’Chen, C., G. Gao, J. Qi, A. Proshutinsky, R. Beardsley, H. Lin, G. Cowles, and H. Huang, 2009. A new high-resolution unstructured-grid, finite-volume Arctic Ocean model (AO-FVCOM): An application for tidal simulation, Journal of Geophysical Research, 114, C08017, Doi: ([http://dx.doi.org/10.1029/2008JC004941 10.1029/2008JC004941]).’’’
*'''Chen C. S., Huang, H. S., Beardsley, R. C., Liu, H. D., Xu, Q. C., Cowles, G., 2007. A finite volume numerical approach for coastal ocean circulation studies: Comparisons with finite difference models. Journal of Geophysical Research, 12, C03018, Doi: ([http://dx.doi.org/10.1029/2006JC003485 10.1029/2006JC003485]).'''
*’’’Lai, Z., C. Chen, G. Cowles, and R.C. Beardsley, 2010. A non-hydrostatic version of FVCOM-validation experiment II: Lock-exchange flow and internal solitary waves, Journal of Geophysical Research, 115, C11010, Doi: ([http://dx.doi.org/10.1029/2009JC005525 10.1029/2009JC005525]).’’’
 
*’’’Lai, Z., C. Chen, G. Cowles, and R.C. Beardsley, 2010. A non-hydrostatic version of FVCOM-validation experiment I: surface standing and solitary waves, Journal of Geophysical Research, 115, C11010, Doi: ([http://dx.doi.org/10.1029/2009JC005525 10.1029/2009JC005525]).  
*'''Chen, C., G. Gao, J. Qi, A. Proshutinsky, R. Beardsley, H. Lin, G. Cowles, and H. Huang, 2009. A new high-resolution unstructured-grid, finite-volume Arctic Ocean model (AO-FVCOM): An application for tidal simulation, Journal of Geophysical Research, 114, C08017, Doi: ([http://dx.doi.org/10.1029/2008JC004941 10.1029/2008JC004941]).'''
 
*'''Lai, Z., C. Chen, G. Cowles, and R.C. Beardsley, 2010. A non-hydrostatic version of FVCOM-validation experiment II: Lock-exchange flow and internal solitary waves, Journal of Geophysical Research, 115, C11010, Doi: ([http://dx.doi.org/10.1029/2009JC005525 10.1029/2009JC005525]).'''
 
*'''Lai, Z., C. Chen, G. Cowles, and R.C. Beardsley, 2010. A non-hydrostatic version of FVCOM-validation experiment I: surface standing and solitary waves, Journal of Geophysical Research, 115, C11010, Doi: ([http://dx.doi.org/10.1029/2009JC005525 10.1029/2009JC005525]).'''
Other Papers:
Other Papers:
* Chen, C., P. Xue, P. Ding, R.C. Beardsley, Q. Xu, X. Mao, G. Gao, J. Qi, C. Li, H. Lin, G. Cowles, and M. Shi, 2008, Physical mechanisms for the offshore detachment of the Changjiang diluted water in the East China Sea, J. Geophy. Res., 113, C02002, Doi: ([http://dx.doi.org/10.1029/2006JC003994 10.1029/2006JC003994]).  
* Chen, C., P. Xue, P. Ding, R.C. Beardsley, Q. Xu, X. Mao, G. Gao, J. Qi, C. Li, H. Lin, G. Cowles, and M. Shi, 2008, Physical mechanisms for the offshore detachment of the Changjiang diluted water in the East China Sea, J. Geophy. Res., 113, C02002, Doi: ([http://dx.doi.org/10.1029/2006JC003994 10.1029/2006JC003994]).  
* Chen, C., Q. Xu, R. Houghton and R. C. Beardsley, 2008. A model-dye comparison experiment in the tidal mixing front zone on the southern flank of Georges Bank.  J. Geophys. Res., 113, C02005, Doi: ([http://dx.doi.org/10.1029/2007jc004106 10.1029/2007jc004106]).
* Chen, C., Q. Xu, R. Houghton and R. C. Beardsley, 2008. A model-dye comparison experiment in the tidal mixing front zone on the southern flank of Georges Bank.  J. Geophys. Res., 113, C02005, Doi: ([http://dx.doi.org/10.1029/2007jc004106 10.1029/2007jc004106]).
* Chen, C, J. Qi, C. Li, R. C. Beardsley, H. Lin, R. Walker and K. Gates, 2008. Complexity of the flooding/drying process in an estuarine tidal-creek salt-marsh system: an application of FVCOM (DRAFT). J. Geophys. Res. Doi: ([http://dx.doi.org/10.1029/2007JC004328 10.1029/2007JC004328]).  
 
* Chen, C, J. Qi, C. Li, R. C. Beardsley, H. Lin, R. Walker and K. Gates, 2008. Complexity of the flooding/drying process in an estuarine tidal-creek salt-marsh system: an application of FVCOM (DRAFT). J. Geophys. Res. Doi: ([http://dx.doi.org/10.1029/2007JC004328 10.1029/2007JC004328]).
*Chen, C., P. Malanotte-Rizzoli, J. Wei, R. Beardsley, Z. Lai, P. Xue, S.J Lyu, Q. Xu, J. Qi, and G. Cowles, Validation of Kalman Filters for Coastal Ocean Problems: An Experiment with FVCOM, J. Geophys. Res., submitted.  
*Chen, C., P. Malanotte-Rizzoli, J. Wei, R. Beardsley, Z. Lai, P. Xue, S.J Lyu, Q. Xu, J. Qi, and G. Cowles, Validation of Kalman Filters for Coastal Ocean Problems: An Experiment with FVCOM, J. Geophys. Res., submitted.  
* Chen, C., R.C. Beardsley, Q. Xu, G. Cowles, and R. Limeburner, Tidal dynamics in the Gulf of Maine and New England Shelf: An application of FVCOM, J. Geophys. Res., in revision.  
* Chen, C., R.C. Beardsley, Q. Xu, G. Cowles, and R. Limeburner, Tidal dynamics in the Gulf of Maine and New England Shelf: An application of FVCOM, J. Geophys. Res., in revision.  
* Qi, J., C. Chen, R.C. Beardsley, W. Perrie, G. Cowles, and Z. Lai. An unstructured-grid, finite-volume wave model (UG-SWAN): Implementation, validation, and applications". Ocean Modelling, submitted.  
* Qi, J., C. Chen, R.C. Beardsley, W. Perrie, G. Cowles, and Z. Lai. An unstructured-grid, finite-volume wave model (UG-SWAN): Implementation, validation, and applications". Ocean Modelling, submitted.  
* Tian, R.C., C. Chen, K. Stokesbury, B. Rothschild, G. Cowles, Q. Xu, S. Hu, B. Harris, and M. Marino, Interannual variability in scallop larval dispersal and settlement on Georges Bank: A modeling experiment ,Marine Ecology Progress Series, submitted.  
* Tian, R.C., C. Chen, K. Stokesbury, B. Rothschild, G. Cowles, Q. Xu, S. Hu, B. Harris, and M. Marino, Interannual variability in scallop larval dispersal and settlement on Georges Bank: A modeling experiment ,Marine Ecology Progress Series, submitted.  
* Weisberg, R.H. and L.Y. Zheng. Ivan-like hurricane storm surges for the Tampa Bay, Florida region simulated with 3-D and 2-D models. J. Geophy. Res., submitted.  
* Weisberg, R.H. and L.Y. Zheng. Ivan-like hurricane storm surges for the Tampa Bay, Florida region simulated with 3-D and 2-D models. J. Geophy. Res., submitted.  
* Zheng, L.Y. and R.H. Weisberg, 2010. Rookery Bay and Naples Bay circulation simulations: Applications to tides and fresh water inflow regulation. Ecological Modelling, 7, 986~996, Doi: ([http://dx.doi.org/10.1016/j.ecolmodel.2009.01.024 10.1016/j.ecolmodel.2009.01.024]).


* Zheng, L.Y. and R.H. Weisberg, 2010. Rookery Bay and Naples Bay circulation simulations: Applications to tides and fresh water inflow regulation. Ecological Modelling, 7, 986~996, Doi: ([http://dx.doi.org/10.1016/j.ecolmodel.2009.01.024 10.1016/j.ecolmodel.2009.01.024]).
|Manual model available=Yes
|Manual model available=Yes
|Model website if any=http://fvcom.smast.umassd.edu/FVCOM/index.html
|Model website if any=http://fvcom.smast.umassd.edu/FVCOM/index.html

Revision as of 17:47, 29 March 2011

Contact

Name Changsheng Chen
Type of contact Model developer
Institute / Organization University of Massachusetts
Postal address 1 706 South Rodney French Blvd
Postal address 2
Town / City Dartmouth
Postal code 02744
State Massachusetts
Country USA"USA" is not in the list (Afghanistan, Albania, Algeria, Andorra, Angola, Antigua and Barbuda, Argentina, Armenia, Australia, Austria, ...) of allowed values for the "Country" property.
Email address c1chen@umassd.edu
Phone 508-910-6388
Fax (508) 910-6371


Name Robert Beardsley
Type of contact Model developer
Institute / Organization Woods Hole Oceanographic Institution
Postal address 1
Postal address 2
Town / City Woods Hole
Postal code 02543
State
Country USA"USA" is not in the list (Afghanistan, Albania, Algeria, Andorra, Angola, Antigua and Barbuda, Argentina, Armenia, Australia, Austria, ...) of allowed values for the "Additional country" property.
Email address rbeardsley@whoi.edu
Phone +1 508 289 2536
Fax +1 508 457 2181



FVCOM


Metadata

Summary

Also known as
Model type Modular
Model part of larger framework
Note on status model
Date note status model

physical oceanography,

Technical specs

Supported platforms
Linux
Other platform
Programming language

Fortran90

Other program language
Code optimized Single Processor, Parallel

Computing"Parallel </br>Computing" is not in the list (Single Processor, Multiple Processors) of allowed values for the "Code optimized" property.

Multiple processors implemented
Nr of distributed processors
Nr of shared processors
Start year development 2001
Does model development still take place? Yes
If above answer is no, provide end year model development
Code development status
When did you indicate the 'code development status'?
Model availability As code
Source code availability
(Or provide future intension)
Through web repository
Source web address http://fvcom.smast.umassd.edu/FVCOM/Source/code.htm
Source csdms web address
Program license type Other
Program license type other FVCOM End User License Agreement University of Massachusetts – Dartmouth
Memory requirements --
Typical run time --


In/Output

Describe input parameters Tides, Winds, Heat flux, Preccipitation/Evaporation, River discharges, Groundwater, O.B. fluxes
Input format ASCII, Binary
Other input format
Describe output parameters --
Output format Binary
Other output format NetCDF
Pre-processing software needed? No
Describe pre-processing software
Post-processing software needed? Yes
Describe post-processing software GUI Post-process tools
Visualization software needed? Yes
If above answer is yes
Other visualization software Visit


Process

Describe processes represented by the model The present version of FVCOM includes a number of options and components as shown in Figure above. These include:
  1. choice of Cartesian or spherical coordinate system,
  2. a mass-conservative wet/dry point treatment for the flooding/drying process simulation,
  3. the General Ocean Turbulent Model (GOTM) modules (Burchard et al., 1999; Burchard, 2002) for optional vertical turbulent mixing schemes,
  4. a water quality module to simulate dissolved oxygen and other environmental indicators,
  5. 4-D nudging and Reduced/Ensemble Kalman Filters (implemented in collaboration with P. Rizzoli at MIT) for data assimilation,
  6. fully-nonlinear ice models (implemented by F. Dupont),
  7. a 3-D sediment transport module (based on the U.S.G.S. national sediment transport model) for estuarine and near-shore applications, and
  8. a flexible biological module (FBM) for food web dynamics study.

FBM includes seven groups: nutrients, autotrophy, heterotrophy, detritus, dissolved organic matter, bacteria, and other. With various pre-built functions and parameters for these groups, GBM allows users to either select a pre-built biological model (such as NPZ, NPZD, etc.) or to build their own biological model using the pre-defined pool of biological variables and parameterization functions.

Describe key physical parameters and equations
Describe length scale and resolution constraints --
Describe time scale and resolution constraints --
Describe any numerical limitations and issues --


Testing

Describe available calibration data sets FVCOM was originally developed for the estuarine flooding/drying process in estuaries and the tidal-, buoyancy- and wind-driven circulation in the coastal region featured with complex irregular geometry and steep bottom topography. This model has been upgraded to the spherical coordinate system for basin and global applications. A non-hydrostatic version of FVCOM has been coded and is being tested.

See also website for model validations.

Upload calibration data sets if available:
Describe available test data sets --
Upload test data sets if available:
Describe ideal data for testing --


Other

Do you have current or future plans for collaborating with other researchers? --
Is there a manual available? Yes
Upload manual if available:
Model website if any http://fvcom.smast.umassd.edu/FVCOM/index.html
Model forum / discussion board http://foros.dgeo.udec.cl/fvcom/
Comments FVCOM is an open source code ocean community model that always welcomes new users. This program is only permitted for use in non-commercial academic research and education. Users are required to register in orde to receive the source codes, demo examples, and user manuals as well as some recommended postprocessing tools.



Introduction

History

Papers

Issues

Help

Input Files

Output Files

Download

Source