Importing TopoFlow packages:
   topoflow.utils
   topoflow.utils.tests
   topoflow.components
   topoflow.components.tests
   topoflow.framework
   topoflow.framework.tests
   topoflow.gui (unfinished)
 
 
Paths for this package:
framework_dir = /home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/framework/
parent_dir    = /home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/
examples_dir  = /home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/examples/
__file__      = /home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/framework/emeli.pyc
__name__      = topoflow.framework.emeli
 
/home/csdms/wmt/topoflow.1/opt/coupling/cmt/component/component.py:208: UserWarning: component does not use satzone
  warnings.warn('component does not use %s' % uses)
/home/csdms/wmt/topoflow.1/opt/coupling/cmt/component/component.py:208: UserWarning: component does not use evap
  warnings.warn('component does not use %s' % uses)
/home/csdms/wmt/topoflow.1/opt/coupling/cmt/component/component.py:208: UserWarning: component does not use meteorology
  warnings.warn('component does not use %s' % uses)
/home/csdms/wmt/topoflow.1/opt/coupling/cmt/component/component.py:208: UserWarning: component does not use snow
  warnings.warn('component does not use %s' % uses)
/home/csdms/wmt/topoflow.1/opt/coupling/cmt/component/component.py:208: UserWarning: component does not use channels
  warnings.warn('component does not use %s' % uses)
 
Channels component: Initializing...
############################################################
 ERROR: Could not find monitored pixel file:
 /home/huttone/.wmt/33ee1aff-2f94-4be9-8987-e19db9b0b863/ChannelsKinematicWave/case_outlets.txt
 Creating default version of file. 
############################################################
 
CHANNELS calling read_input_files()...
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/utils/model_input.py:120: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (data == None):
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/channels_base.py:2083: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (slope != None): self.slope = slope
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/channels_base.py:2091: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (nval != None):
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/channels_base.py:2104: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (width != None): self.width = width
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/channels_base.py:2107: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (angle != None):
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/channels_base.py:2115: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (sinu != None): self.sinu = sinu
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/channels_base.py:2118: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (d0 != None): self.d0 = d0
S_free is unset
CHANNELS calling initialize_d8_vars()...
WARNING: cfg_file not found:
         /home/huttone/.wmt/33ee1aff-2f94-4be9-8987-e19db9b0b863/ChannelsKinematicWave/site_d8.cfg
Reading D8 flow grid...
Finding parent pixel IDs...
Finding edge pixel IDs...
Computing flow width grid...
    min(dw) = 10.0  [m]
    max(dw) = 14.1421  [m]
Computing flow length grid...
    min(ds) = 10.0  [m]
    max(ds) = 14.1421  [m]
CHANNELS calling initialize_computed_vars()...
Initializing u, f, d grids...
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/channels_base.py:2539: RuntimeWarning: invalid value encountered in less_equal
  wb = np.where(np.logical_or((self.slope <= 0.0), \
size(slope) = 666064
size(wb) = 85350
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/channels_base.py:2545: RuntimeWarning: invalid value encountered in less_equal
  wg = np.where(np.invert(np.logical_or((self.slope <= 0.0), \
-------------------------------------------------
WARNING: Zero or negative slopes found.
         Replacing them with smallest slope.
         Use "Profile smoothing tool" instead.
         min(S) = 0.785398185253
         max(S) = 5.49778699875
-------------------------------------------------
 
S_free is still unset
Imported netCDF4 version: 1.2.2
 
Groundwater component: Initializing...
############################################################
 ERROR: Could not find monitored pixel file:
 /home/huttone/.wmt/33ee1aff-2f94-4be9-8987-e19db9b0b863/SatzoneDarcyLayers/case_outlets.txt
 Creating default version of file. 
############################################################
 
WARNING: cfg_file not found:
         /home/huttone/.wmt/33ee1aff-2f94-4be9-8987-e19db9b0b863/SatzoneDarcyLayers/site_d8.cfg
Reading D8 flow grid...
Finding parent pixel IDs...
Finding edge pixel IDs...
Computing flow width grid...
    min(dw) = 10.0  [m]
    max(dw) = 14.1421  [m]
Computing flow length grid...
    min(ds) = 10.0  [m]
    max(ds) = 14.1421  [m]
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/satzone_base.py:1384: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (elev != None): self.elev = elev
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/satzone_base.py:1387: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (h0_table != None): self.h0_table = h0_table
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/satzone_base.py:1408: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (Ks != None): self.Ks[j] = Ks
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/satzone_base.py:1411: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (qs != None): self.qs[j] = qs
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/satzone_base.py:1414: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (th != None): self.th[j] = th
Imported netCDF4 version: 1.2.2
 
Evaporation component: Initializing...
############################################################
 ERROR: Could not find monitored pixel file:
 /home/huttone/.wmt/33ee1aff-2f94-4be9-8987-e19db9b0b863/EvapEnergyBalance/case_outlets.txt
 Creating default version of file. 
############################################################
 
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/evap_energy_balance.py:378: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (K_soil != None): self.K_soil = K_soil
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/evap_energy_balance.py:381: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (soil_x != None): self.soil_x = soil_x
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/evap_energy_balance.py:384: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (T_soil_x != None): self.T_soil_x = T_soil_x
/home/csdms/wmt/topoflow.1/conda/lib/python2.7/site-packages/numpy/core/fromnumeric.py:2645: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`.
  VisibleDeprecationWarning)
Imported netCDF4 version: 1.2.2
 
Meteorology component: Initializing...
############################################################
 ERROR: Could not find monitored pixel file:
 /home/huttone/.wmt/33ee1aff-2f94-4be9-8987-e19db9b0b863/Meteorology/case_outlets.txt
 Creating default version of file. 
############################################################
 
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/met_base.py:1814: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (rho_H2O != None): self.rho_H2O = rho_H2O
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/utils/model_input.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (factor != 1) and (data != None):
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/met_base.py:1819: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (P != None):
In read_input_files():
   min(P) = 0.0  [mmph]
   max(P) = 0.0  [mmph]
 
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/met_base.py:1868: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (T_air != None): self.T_air = T_air
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/met_base.py:1871: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (T_surf != None): self.T_surf = T_surf
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/met_base.py:1874: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (RH != None): self.RH = RH
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/met_base.py:1877: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (p0 != None): self.p0 = p0
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/met_base.py:1880: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (uz != None): self.uz = uz
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/met_base.py:1883: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (z != None): self.z = z
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/met_base.py:1886: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (z0_air != None): self.z0_air = z0_air
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/met_base.py:1895: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (albedo != None): self.albedo = albedo
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/met_base.py:1898: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (em_surf != None): self.em_surf = em_surf
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/met_base.py:1901: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (dust_atten != None): self.dust_atten = dust_atten
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/met_base.py:1904: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (cloud_factor != None): self.cloud_factor = cloud_factor
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/met_base.py:1907: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (canopy_factor != None): self.canopy_factor = canopy_factor
SORRY: Cannot yet create lon and lat grids for
       this DEM because it uses UTM coordinates.
       Will use lat/lon for Denver, Colorado.
 
Imported netCDF4 version: 1.2.2
 
Snow component: Initializing...
############################################################
 ERROR: Could not find monitored pixel file:
 /home/huttone/.wmt/33ee1aff-2f94-4be9-8987-e19db9b0b863/SnowDegreeDay/case_pixels.txt
 Creating default version of file. 
############################################################
 
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/snow_degree_day.py:340: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (c0 != None): self.c0 = c0
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/snow_degree_day.py:343: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (T0 != None): self.T0 = T0
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/snow_degree_day.py:346: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (rho_snow != None): self.rho_snow = rho_snow
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/snow_degree_day.py:349: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (h0_snow != None): self.h0_snow = h0_snow
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/snow_degree_day.py:352: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (h0_swe != None): self.h0_swe = h0_swe
Imported netCDF4 version: 1.2.2
/home/csdms/wmt/topoflow.1/opt/coupling/cmt/printers/nc/write.py:17: UserWarning: resetting "keep_open" to True
  warn('resetting "keep_open" to True', UserWarning)
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/utils/ncgs_files.py:435: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (time == None):
   dz_min = 0.0
   dz_max = 0.0
   n_rising  = 0
   n_falling = 666064
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/solar_funcs.py:740: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (hour_num != None):
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/solar_funcs.py:369: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (gamma_dust == None):
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/solar_funcs.py:430: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (gamma_dust == None):
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/solar_funcs.py:411: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (gamma_dust == None):
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/solar_funcs.py:468: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (gamma_dust == None):
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/solar_funcs.py:445: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (gamma_dust == None):
/home/csdms/wmt/topoflow.1/opt/topoflow/topoflow/components/solar_funcs.py:396: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future.
  if (gamma_dust == None):
   dz_min = 0.0
   dz_max = 0.0
   n_rising  = 0
   n_falling = 666064
   dz_min = 0.0
   dz_max = 0.0
   n_rising  = 0
   n_falling = 666064
   dz_min = 0.0
   dz_max = 0.0
   n_rising  = 0
   n_falling = 666064
   dz_min = 0.0
   dz_max = 0.0
   n_rising  = 0
   n_falling = 666064
   dz_min = 0.0
   dz_max = 0.0
   n_rising  = 0
   n_falling = 666064
Meteorology component: Finished.
Snow component: Finished.
Evaporation component: Finished.
Groundwater component: Finished.
In channels_base.update_mins_and_maxes():
(dmin, dmax) = 0.0 660245.730164
(umin, umax) = 0.0 158.216219197
(Qmin, Qmax) = 0.0 110040.153907
 
Channels component: Finished.
