This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by HDF5 configure 1.8.6, which was generated by GNU Autoconf 2.67. Invocation command line was $ ./configure --with-zlib=/home/beach/guest/dafu8991/MYCODE --prefix=/home/beach/guest/dafu8991/MYCODE ## --------- ## ## Platform. ## ## --------- ## hostname = beach uname -m = x86_64 uname -r = 2.6.18-92.el5 uname -s = Linux uname -v = #1 SMP Tue Apr 29 13:16:15 EDT 2008 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/local/matlab-2008b/bin PATH: /usr/local/maui/bin PATH: /opt/torque/bin PATH: /home/csdms/tools/pbstools/0.1/sbin PATH: /home/csdms/tools/pbstools/0.1/bin PATH: /home/csdms/tools/pbstools/internal/bin PATH: /usr/local/hdf5/bin PATH: /usr/local/netcdf/bin PATH: /usr/local/mvapich2/bin PATH: /usr/local/modules-3.2.6/Modules/3.2.6/bin PATH: /home/beach/guest/dafu8991/bin PATH: /usr/local/ssh/bin PATH: /usr/local/bin PATH: /usr/bin PATH: /usr/sbin PATH: /usr/local/etc PATH: /usr/lib64 PATH: /usr/local/gnu/bin PATH: /usr/local/X11/bin PATH: /usr/local/perl/bin PATH: /usr/local/python/bin PATH: /usr/local/TeX/bin PATH: /usr/local/tcl-tk/bin PATH: /usr/local/lang/bin PATH: /usr/local/emacs/bin PATH: /bin PATH: /usr/openwin/bin PATH: /usr/ccs/bin PATH: /usr/ucb PATH: /usr/local/subversion/bin PATH: /usr/local/python/bin PATH: /usr/X11R6/bin PATH: /home/beach/guest/bevera/MYCODE/NCO/nco-4.0.0/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:3191: checking for a BSD-compatible install configure:3259: result: /usr/bin/install -c configure:3270: checking whether build environment is sane configure:3320: result: yes configure:3461: checking for a thread-safe mkdir -p configure:3500: result: /bin/mkdir -p configure:3513: checking for gawk configure:3529: found /usr/bin/gawk configure:3540: result: gawk configure:3551: checking whether make sets $(MAKE) configure:3573: result: yes configure:3655: checking whether to enable 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Disable this feature. alias -g '\''${1+"$@"}'\''='\''"$@"'\'' setopt NO_GLOB_SUBST else case `(set -o) 2>/dev/null` in #( *posix*) : set -o posix ;; #( *) : ;; esac fi ' as_cr_LETTERS=ABCDEFGHIJKLMNOPQRSTUVWXYZ as_cr_Letters=abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ as_cr_alnum=abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789 as_cr_digits=0123456789 as_cr_letters=abcdefghijklmnopqrstuvwxyz as_dir=/usr/bin as_dirname=dirname as_echo='printf %s\n' as_echo_n='printf %s' as_executable_p='test -x' as_expr=expr as_have_required=yes as_lineno_1=433 as_lineno_1a=433 as_lineno_2=434 as_lineno_2a=434 as_ln_s='ln -s' as_me=configure as_mkdir_p='mkdir -p "$as_dir"' as_myself=./configure as_nl=' ' as_required='as_fn_return () { (exit $1); } as_fn_success () { as_fn_return 0; } as_fn_failure () { as_fn_return 1; } as_fn_ret_success () { return 0; } as_fn_ret_failure () { return 1; } exitcode=0 as_fn_success || { exitcode=1; echo as_fn_success failed.; } as_fn_failure && { exitcode=1; echo as_fn_failure succeeded.; } as_fn_ret_success || { exitcode=1; echo as_fn_ret_success failed.; } as_fn_ret_failure && { exitcode=1; echo as_fn_ret_failure succeeded.; } if ( set x; as_fn_ret_success y && test x = "$1" ); then : else exitcode=1; echo positional parameters were not saved. fi test x$exitcode = x0 || exit 1' as_save_IFS=' ' as_suggested=' as_lineno_1=173 as_lineno_1a=$LINENO as_lineno_2=174 as_lineno_2a=$LINENO eval '\''test "x$as_lineno_1'\''$as_run'\''" != "x$as_lineno_2'\''$as_run'\''" && test "x`expr $as_lineno_1'\''$as_run'\'' + 1`" = "x$as_lineno_2'\''$as_run'\''"'\'' || exit 1 test -n "${ZSH_VERSION+set}${BASH_VERSION+set}" || ( ECHO='\''\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\'\'' ECHO=$ECHO$ECHO$ECHO$ECHO$ECHO ECHO=$ECHO$ECHO$ECHO$ECHO$ECHO$ECHO PATH=/empty FPATH=/empty; export PATH FPATH test "X`printf %s $ECHO`" = "X$ECHO" \ || test "X`print -r -- $ECHO`" = "X$ECHO" ) || exit 1 test $(( 1 + 1 )) = 2 || exit 1' as_test_x='test -x' as_tr_cpp='eval sed '\''y%*abcdefghijklmnopqrstuvwxyz%PABCDEFGHIJKLMNOPQRSTUVWXYZ%;s%[^_abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789]%_%g'\''' as_tr_sh='eval sed '\''y%*+%pp%;s%[^_abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789]%_%g'\''' as_unset=as_fn_unset as_var=MAILPATH bindir='${exec_prefix}/bin' build=x86_64-unknown-linux-gnu build_cpu=x86_64 build_os=linux-gnu build_vendor=unknown cache_file=/dev/null cross_compiling=no datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix=NONE host=x86_64-unknown-linux-gnu host_cpu=x86_64 host_os=linux-gnu host_vendor=unknown htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /home/beach/guest/dafu8991/MYCODE/hdf5-1.8.6/bin/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='/bin/mkdir -p' no_create= no_recursion= oldincludedir=/usr/include pdfdir='${docdir}' prefix=/home/beach/guest/dafu8991/MYCODE program_prefix=NONE program_suffix=NONE program_transform_name=s,x,x, psdir='${docdir}' saved_user_CFLAGS= saved_user_CPPFLAGS=/home/beach/guest/dafu8991/MYCODE/include saved_user_CXXFLAGS= saved_user_FCFLAGS= saved_user_LDFLAGS=/home/beach/guest/dafu8991/MYCODE/lib sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' silent= site= srcdir=. subdirs= sysconfdir='${prefix}/etc' target= verbose= with_zlib=/home/beach/guest/dafu8991/MYCODE x_includes=NONE x_libraries=NONE configure:3799: result: done configure:3826: checking if basename works configure:3832: result: yes configure:3836: checking if xargs works configure:3842: result: yes configure:3846: checking for cached host configure:3853: result: none configure:3908: checking for config x86_64-unknown-linux-gnu configure:3916: result: no configure:3908: checking for config x86_64-unknown-linux-gnu configure:3916: result: no configure:3908: checking for config unknown-linux-gnu configure:3916: result: no configure:3908: checking for config unknown-linux-gnu configure:3916: result: no configure:3908: checking for config x86_64-linux-gnu configure:3916: result: no configure:3908: checking for config x86_64-linux-gnu configure:3916: result: no configure:3908: checking for config x86_64-unknown configure:3916: result: no configure:3908: checking for config linux-gnu configure:3912: result: found configure:3927: checking for config ./config/site-specific/host-beach configure:3935: result: no configure:4000: checking for gcc configure:4027: result: gcc configure:4256: checking for C compiler version configure:4265: gcc --version >&5 gcc (GCC) 4.1.2 20071124 (Red Hat 4.1.2-42) Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:4276: $? = 0 configure:4265: gcc -v >&5 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-libgcj-multifile --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --enable-plugin --with-java-home=/usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre --with-cpu=generic --host=x86_64-redhat-linux Thread model: posix gcc version 4.1.2 20071124 (Red Hat 4.1.2-42) configure:4276: $? = 0 configure:4265: gcc -V >&5 gcc: '-V' option must have argument configure:4276: $? = 1 configure:4265: gcc -qversion >&5 gcc: unrecognized option '-qversion' gcc: no input files configure:4276: $? = 1 configure:4296: checking whether the C compiler works configure:4318: gcc /home/beach/guest/dafu8991/MYCODE/include /home/beach/guest/dafu8991/MYCODE/lib conftest.c >&5 /home/beach/guest/dafu8991/MYCODE/include: file not recognized: Is a directory collect2: ld returned 1 exit status configure:4322: $? = 1 configure:4360: result: no configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.6" | #define PACKAGE_STRING "HDF5 1.8.6" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.6" | /* end confdefs.h. */ | | int | main () | { | | ; | return 0; | } configure:4365: error: in `/home/beach/guest/dafu8991/MYCODE/hdf5-1.8.6': configure:4367: error: C compiler cannot create executables See `config.log' for more details ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-unknown-linux-gnu ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set=set ac_cv_env_CPPFLAGS_value=/home/beach/guest/dafu8991/MYCODE/include ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_FCFLAGS_set= ac_cv_env_FCFLAGS_value= ac_cv_env_FC_set= ac_cv_env_FC_value= ac_cv_env_LDFLAGS_set=set ac_cv_env_LDFLAGS_value=/home/beach/guest/dafu8991/MYCODE/lib ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_host=x86_64-unknown-linux-gnu ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_make_make_set=yes hdf5_cv_host=x86_64-unknown-linux-gnu hdf5_cv_mpi_complex_derived_datatype_works=no hdf5_cv_mpi_special_collective_io_works=no ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /home/beach/guest/dafu8991/MYCODE/hdf5-1.8.6/bin/missing --run aclocal-1.11' ADD_PARALLEL_FILES='' AMDEPBACKSLASH='' AMDEP_FALSE='' AMDEP_TRUE='' AMTAR='${SHELL} /home/beach/guest/dafu8991/MYCODE/hdf5-1.8.6/bin/missing --run tar' AM_CFLAGS='' AM_CPPFLAGS='' AM_CXXFLAGS='' AM_FCFLAGS='' AM_LDFLAGS='' AM_MAKEFLAGS='' AR='' AUTOCONF='${SHELL} /home/beach/guest/dafu8991/MYCODE/hdf5-1.8.6/bin/missing --run autoconf' AUTOHEADER='${SHELL} /home/beach/guest/dafu8991/MYCODE/hdf5-1.8.6/bin/missing --run autoheader' AUTOMAKE='${SHELL} /home/beach/guest/dafu8991/MYCODE/hdf5-1.8.6/bin/missing --run automake-1.11' AWK='gawk' BUILD_ALL_CONDITIONAL_FALSE='' BUILD_ALL_CONDITIONAL_TRUE='' BUILD_CXX_CONDITIONAL_FALSE='' BUILD_CXX_CONDITIONAL_TRUE='' BUILD_FORTRAN_CONDITIONAL_FALSE='' BUILD_FORTRAN_CONDITIONAL_TRUE='' BUILD_HDF5_HL_CONDITIONAL_FALSE='' BUILD_HDF5_HL_CONDITIONAL_TRUE='' BUILD_PARALLEL_CONDITIONAL_FALSE='' BUILD_PARALLEL_CONDITIONAL_TRUE='' BUILD_SZIP_CONDITIONAL_FALSE='' BUILD_SZIP_CONDITIONAL_TRUE='' BYTESEX='' CC='gcc' CCDEPMODE='' CC_VERSION='' CFLAGS=' ' CLEARFILEBUF='' CODESTACK='no' CONFIG_DATE='' CONFIG_MODE='' CONFIG_USER='' CPP='' CPPFLAGS=' /home/beach/guest/dafu8991/MYCODE/include' CXX='g++' CXXCPP='' CXXDEPMODE='' CXXFLAGS=' ' CXX_SHARED_CONDITIONAL_FALSE='' CXX_SHARED_CONDITIONAL_TRUE='' CXX_VERSION='' CYGPATH_W='echo' DEBUG_PKG='' DEFAULT_API_VERSION='' DEFS='' DEPDIR='' DEPRECATED_SYMBOLS='' DIRECT_VFD='no' DIRECT_VFD_CONDITIONAL_FALSE='' DIRECT_VFD_CONDITIONAL_TRUE='' DSYMUTIL='' DUMPBIN='' DYNAMIC_DIRS='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='' EXEEXT='' EXTERNAL_FILTERS='' F9XMODEXT='' F9XMODFLAG='' F9XSUFFIXFLAG='' FC='gfortran' FCFLAGS=' ' FCFLAGS_f90='' FCLIBS='' FC_VERSION='' FGREP='' FILTERS='' FORTRAN_DEFAULT_REALisDBLE_F_FALSE='' FORTRAN_DEFAULT_REALisDBLE_F_TRUE='' FORTRAN_HAVE_SIZEOF_FALSE='' FORTRAN_HAVE_SIZEOF_TRUE='' FORTRAN_SHARED_CONDITIONAL_FALSE='' FORTRAN_SHARED_CONDITIONAL_TRUE='' FSEARCH_DIRS='' GPFS='no' GREP='' H5_CFLAGS='-std=c99 -pedantic -Wall -Wextra -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -Wno-long-long -Wfloat-equal -Wmissing-format-attribute -Wmissing-noreturn -Wpacked -Wdisabled-optimization -Wformat=2 -Wunreachable-code -Wendif-labels -Wdeclaration-after-statement -Wold-style-definition -Winvalid-pch -Wvariadic-macros -Wnonnull -Winit-self -Wmissing-include-dirs -Wswitch-default -Wswitch-enum -Wunused-macros -Wunsafe-loop-optimizations -Wc++-compat -Wvolatile-register-var' H5_CPPFLAGS='' H5_CXXFLAGS='' H5_FCFLAGS='' H5_LONE_COLON='' H5_VERSION='' HADDR_T='' HAVE_DMALLOC='no' HDF5_HL='yes' HDF5_INTERFACES='' HDF_CXX='no' HDF_FORTRAN='no' HID_T='' HL='' HL_FOR='' HSIZE_T='' HSSIZE_T='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' INSTRUMENT='' INSTRUMENT_LIBRARY='' LARGEFILE='yes' LD='' LDFLAGS=' /home/beach/guest/dafu8991/MYCODE/lib' LIBOBJS='' LIBS='' LIBTOOL='' LIPO='' LL_PATH='' LN_S='' LTLIBOBJS='' LT_STATIC_EXEC='' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKEINFO='${SHELL} /home/beach/guest/dafu8991/MYCODE/hdf5-1.8.6/bin/missing --run makeinfo' MKDIR_P='/bin/mkdir -p' MPE='no' MPI_GET_SIZE='' NM='' NMEDIT='' OBJDUMP='' OBJECT_NAMELEN_DEFAULT_F='' OBJEXT='' OTOOL64='' OTOOL='' PACKAGE='hdf5' PACKAGE_BUGREPORT='help@hdfgroup.org' PACKAGE_NAME='HDF5' PACKAGE_STRING='HDF5 1.8.6' PACKAGE_TARNAME='hdf5' PACKAGE_URL='' PACKAGE_VERSION='1.8.6' PACKED_BITS='yes' PARALLEL='' PATH_SEPARATOR=':' PERL='' PTHREAD='' RANLIB='' ROOT='' RUNPARALLEL='' RUNSERIAL='' R_INTEGER='' R_LARGE='' SEARCH='' SED='' SETX='' SET_MAKE='' SHELL='/bin/sh' SIZE_T='' STATIC_EXEC='no' STATIC_SHARED='' STRICT_FORMAT_CHECKS='' STRIP='' TESTPARALLEL='' THREADSAFE='no' TIME='' TR='' TRACE_API='' UNAME_INFO='Linux beach 2.6.18-92.el5 #1 SMP Tue Apr 29 13:16:15 EDT 2008 x86_64 x86_64 x86_64 GNU/Linux' USE_FILTER_DEFLATE='' USE_FILTER_FLETCHER32='' USE_FILTER_NBIT='' USE_FILTER_SCALEOFFSET='' USE_FILTER_SHUFFLE='' USE_FILTER_SZIP='' USINGMEMCHECKER='' VERSION='1.8.6' WORDS_BIGENDIAN='' ac_ct_CC='gcc' ac_ct_CXX='' ac_ct_DUMPBIN='' ac_ct_FC='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='' am__fastdepCC_FALSE='' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='' am__fastdepCXX_TRUE='' am__include='' am__isrc='' am__leading_dot='.' am__quote='' am__tar='${AMTAR} chof - "$$tardir"' am__untar='${AMTAR} xf -' bindir='${exec_prefix}/bin' build='x86_64-unknown-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='unknown' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' enable_shared='' enable_static='' exec_prefix='NONE' host='x86_64-unknown-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='unknown' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /home/beach/guest/dafu8991/MYCODE/hdf5-1.8.6/bin/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='/bin/mkdir -p' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/home/beach/guest/dafu8991/MYCODE' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "HDF5" #define PACKAGE_TARNAME "hdf5" #define PACKAGE_VERSION "1.8.6" #define PACKAGE_STRING "HDF5 1.8.6" #define PACKAGE_BUGREPORT "help@hdfgroup.org" #define PACKAGE_URL "" #define PACKAGE "hdf5" #define VERSION "1.8.6" configure: exit 77