#include "utils/utils.h"
#include "sed_cube.h"
Go to the source code of this file.
Defines | |
#define | DEFAULT_BINS (16) |
#define | SED_KEY_MARGIN_NAME "margin name" |
#define | SED_KEY_V_RES "vertical resolution" |
#define | SED_KEY_X_RES "x resolution" |
#define | SED_KEY_Y_RES "y resolution" |
#define | SED_KEY_H_RES "horizontal resolution" |
#define | SED_KEY_LENGTH "basin length" |
#define | SED_KEY_WIDTH "basin width" |
#define | SED_KEY_BATHY_FILE "bathymetry file" |
#define | SED_KEY_SEDIMENT_FILE "sediment file" |
#define | VARY_COLS (0) |
#define | VARY_ROWS (1) |
#define | S_KEY_SUBSIDENCE_TIME "time" |
Functions | |
GQuark | sed_cube_susp_grid_quark (void) |
GQuark | sed_cube_error_quark (void) |
void | sed_mode_set (Sedflux_mode mode) |
gboolean | sed_mode_is (Sedflux_mode mode) |
gboolean | sed_mode_is_2d (void) |
gboolean | sed_mode_is_3d (void) |
Sed_cube | sed_cube_new (gssize n_x, gssize n_y) |
Sed_cube | sed_cube_new_empty (gssize n_x, gssize n_y) |
Sed_cube | sed_cube_new_from_file (const gchar *file, GError **error) |
Sed_cube | sed_cube_free (Sed_cube s, gboolean free_data) |
Sed_cube | sed_cube_free_river (Sed_cube p) |
Sed_cube | sed_cube_destroy (Sed_cube s) |
Sed_cube | sed_cube_copy_scalar_data (Sed_cube dest, const Sed_cube src) |
Sed_cube | sed_cube_copy_pointer_data (Sed_cube dest, const Sed_cube src) |
Sed_cell_grid | sed_cube_create_in_suspension (Sed_cube s) |
Sed_cell_grid | sed_cube_destroy_in_suspension (Sed_cell_grid g) |
GSList * | sed_cube_storm_list (Sed_cube c) |
Sed_cube | sed_cube_set_storm_list (Sed_cube c, GSList *storms) |
void | __free_slist_ocean_storm_data (Sed_ocean_storm s, gpointer user_data) |
Sed_cube | sed_cube_destroy_storm_list (Sed_cube c) |
Sed_cube | sed_cube_set_bathy (Sed_cube c, Eh_dbl_grid g) |
Sed_cube | sed_cube_set_dz (Sed_cube p, double new_dz) |
char * | sed_cube_name (const Sed_cube s) |
gssize | sed_cube_size (const Sed_cube s) |
gssize | sed_cube_n_x (const Sed_cube s) |
gssize | sed_cube_n_y (const Sed_cube s) |
Sed_column | sed_cube_col (const Sed_cube s, gssize ind) |
Sed_column | sed_cube_col_ij (const Sed_cube s, gssize i, gssize j) |
Sed_column | sed_cube_col_pos (const Sed_cube s, double x, double y) |
double | sed_cube_sea_level (const Sed_cube s) |
double * | sed_cube_x (const Sed_cube s, gssize *id) |
double * | sed_cube_y (const Sed_cube s, gssize *id) |
double | sed_cube_col_x (const Sed_cube s, gssize id) |
double | sed_cube_col_x_ij (const Sed_cube s, gssize i, gssize j) |
double | sed_cube_col_y (const Sed_cube s, gssize id) |
double | sed_cube_col_y_ij (const Sed_cube s, gssize i, gssize j) |
double | sed_cube_x_slope (const Sed_cube s, gssize i, gssize j) |
double | sed_cube_y_slope (const Sed_cube s, gssize i, gssize j) |
double | sed_cube_y_slope_fast (const Sed_cube s, gssize i, gssize j) |
double | sed_cube_slope (const Sed_cube s, gssize i, gssize j) |
double | sed_cube_slope_dir (const Sed_cube s, gssize i, gssize j) |
Eh_pt_2 | sed_cube_slope_vector (const Sed_cube s, gssize i, gssize j) |
double | sed_cube_top_height (const Sed_cube p, gssize i, gssize j) |
Eh_ind_2 | sed_ind2sub (gssize ind, gssize n_y) |
Eh_dbl_grid | sed_cube_grid (const Sed_cube s, Sed_grid_func func, gssize *index) |
Eh_dbl_grid | sed_cube_slope_dir_grid (const Sed_cube s, gssize *index) |
Eh_dbl_grid | sed_cube_x_slope_grid (const Sed_cube s, gssize *index) |
Eh_dbl_grid | sed_cube_y_slope_grid (const Sed_cube s, gssize *index) |
Eh_dbl_grid | sed_cube_water_depth_grid (const Sed_cube s, gssize *index) |
Eh_dbl_grid | sed_cube_thickness_grid (const Sed_cube s, gssize *index) |
Eh_dbl_grid | sed_cube_load_grid (const Sed_cube s, gssize *index) |
Sed_riv | sed_cube_river_by_name (Sed_cube s, const char *name) |
gssize | sed_cube_river_id (Sed_cube s, Sed_riv river) |
Sed_cell_grid | sed_cube_in_suspension (Sed_cube s, Sed_riv river) |
GList * | sed_cube_river_list (Sed_cube s) |
Sed_riv * | sed_cube_all_trunks (Sed_cube s) |
Sed_riv * | sed_cube_all_branches (Sed_cube s) |
Sed_riv * | sed_cube_all_leaves (Sed_cube s) |
Sed_riv * | sed_cube_all_rivers (Sed_cube s) |
gint | sed_cube_n_branches (Sed_cube s) |
gint | sed_cube_n_rivers (Sed_cube s) |
gssize | sed_cube_number_of_rivers (Sed_cube s) |
double | sed_cube_time_step (const Sed_cube s) |
double | sed_cube_time_step_in_years (const Sed_cube s) |
double | sed_cube_time_step_in_seconds (const Sed_cube s) |
double | sed_cube_time_step_in_days (const Sed_cube s) |
Sed_constants | sed_cube_constants (const Sed_cube s) |
double | sed_cube_x_res (const Sed_cube s) |
double | sed_cube_y_res (const Sed_cube s) |
double | sed_cube_z_res (const Sed_cube s) |
Sed_cell | sed_cube_to_remove (const Sed_cube s) |
Sed_cell | sed_cube_to_add (const Sed_cube s) |
gssize | sed_column_x_index (const Sed_cube c, double x) |
gssize | sed_column_y_index (const Sed_cube c, double y) |
double | sed_cube_wave_height (const Sed_cube s) |
double | sed_cube_wave_period (const Sed_cube s) |
double | sed_cube_wave_length (const Sed_cube s) |
double | sed_cube_storm (const Sed_cube s) |
double | sed_cube_quake (const Sed_cube s) |
double | sed_cube_age (const Sed_cube s) |
double | sed_cube_age_in_years (const Sed_cube s) |
double | sed_cube_tidal_period (const Sed_cube s) |
Sed_cube | sed_cube_set_tidal_period (Sed_cube s, double new_val) |
double | sed_cube_tidal_range (const Sed_cube s) |
Sed_cube | sed_cube_set_tidal_range (Sed_cube s, double new_val) |
double | sed_cube_water_depth (const Sed_cube p, gssize i, gssize j) |
double | sed_cube_water_pressure (const Sed_cube p, gssize i, gssize j) |
double | sed_cube_load (const Sed_cube p, gssize i, gssize j) |
double | sed_cube_thickness (const Sed_cube p, gssize i, gssize j) |
gboolean | sed_cube_col_is_empty (const Sed_cube p, gssize i, gssize j) |
double | sed_cube_base_height (const Sed_cube p, gssize i, gssize j) |
Sed_cube | sed_cube_dup (Sed_cube c) |
Sed_cube | sed_cube_copy (Sed_cube dest, const Sed_cube src) |
Sed_cube | sed_cube_copy_cols (const Sed_cube src, gssize *x, gssize *y, double *z, gssize len) |
Sed_cube | sed_cube_copy_line (const Sed_cube src, double *x, double *y, double *z, gssize len) |
Sed_cube | sed_cube_cols (Sed_cube src, gssize *path) |
gssize | sed_cube_river_mouth_1d (Sed_cube c) |
Sed_cube | sed_cube_remove (Sed_cube dest, Sed_cube src) |
Sed_cube | sed_cube_add (Sed_cube dest, const Sed_cube src) |
double | sed_cube_mass (const Sed_cube p) |
double | sed_cube_sediment_mass (const Sed_cube p) |
double | sed_cube_mass_in_suspension (const Sed_cube p) |
Sed_cube | sed_cube_set_sea_level (Sed_cube s, double new_sea_level) |
Sed_cube | sed_cube_adjust_sea_level (Sed_cube s, double dz) |
Sed_cube | sed_cube_set_base_height (Sed_cube s, gssize i, gssize j, double height) |
Sed_cube | sed_cube_adjust_base_height (Sed_cube s, gssize i, gssize j, double dz) |
Sed_cube | sed_cube_set_nth_river (Sed_cube s, gssize n, Sed_riv new_river) |
Eh_pt_2 * | sed_cube_river_mouth_position (Sed_cube s, Sed_riv this_river) |
Sed_cube | sed_cube_set_river_list (Sed_cube s, GList *river_list) |
Sed_cube | sed_cube_split_river (Sed_cube s, const gchar *name) |
void | sed_river_attach_susp_grid (Sed_riv r, Sed_cell_grid g) |
Sed_cell_grid | sed_river_get_susp_grid (Sed_riv r) |
void | sed_river_detach_susp_grid (Sed_riv r) |
Sed_cube | sed_cube_add_trunk (Sed_cube s, Sed_riv new_trunk) |
Sed_cube | sed_cube_remove_river (Sed_cube s, Sed_riv r) |
Sed_cube | sed_cube_remove_all_trunks (Sed_cube s) |
Sed_riv | sed_cube_nth_river (Sed_cube s, gint n) |
Sed_cube | sed_cube_set_name (Sed_cube s, char *name) |
Sed_cube | sed_cube_set_time_step (Sed_cube s, double time_step_in_years) |
Sed_cube | set_cube_set_constants (Sed_cube s, Sed_constants new_c) |
Sed_cube | sed_cube_set_x_res (Sed_cube s, double new_x_res) |
Sed_cube | sed_cube_set_y_res (Sed_cube s, double new_y_res) |
Sed_cube | sed_cube_set_z_res (Sed_cube s, double new_z_res) |
Sed_cube | sed_cube_set_wave_height (Sed_cube s, double new_wave_height) |
Sed_cube | sed_cube_set_wave_period (Sed_cube s, double new_wave_period) |
Sed_cube | sed_cube_set_wave_length (Sed_cube s, double new_wave_length) |
Sed_cube | sed_cube_set_storm (Sed_cube s, double new_storm_value) |
Sed_cube | sed_cube_set_quake (Sed_cube s, double new_quake_value) |
Sed_cube | sed_cube_set_age (Sed_cube s, double new_age) |
Sed_cube | sed_cube_adjust_age (Sed_cube s, double dt) |
Sed_cube | sed_cube_increment_age (Sed_cube s) |
void | sed_cube_set_shore (Sed_cube s) |
GList * | sed_cube_find_shore_line (Sed_cube s, Eh_ind_2 *pos) |
int | eh_compare_ind_2 (Eh_ind_2 *a, Eh_ind_2 *b) |
GList * | sed_find_next_shore (GList *shore_list, Sed_cube s, Eh_ind_2 *pos, GList *ignore_list) |
gboolean | is_shore_cell (Sed_cube s, gssize x, gssize y) |
int | sed_cube_find_shore_edge (Sed_cube s, gssize i, gssize j) |
Eh_ind_2 * | sed_cube_find_adjacent_shore_edge (Sed_cube s, gssize i, gssize j, int edge) |
int | sed_rotate_direction (int dir, int angle) |
gboolean | sed_cube_is_shore_edge (Sed_cube s, gssize i, gssize j, int edge) |
Eh_ind_2 | sed_shift_index_over_edge (gssize i, gssize j, int edge) |
GList * | sed_cube_find_columns_custom (Sed_cube s, gssize i, gssize j, gpointer data, Sed_cube_func stop_func, Sed_cube_func angle_func) |
GList * | sed_cube_find_cross_shore_columns (Sed_cube s, gssize i, gssize j) |
Eh_ind_2 * | sed_cube_find_shore (Sed_cube s, int n, int vary_dim) |
GTree * | sed_create_shore_tree (GList *shore) |
Sed_riv | sed_cube_find_river_mouth (Sed_cube c, Sed_riv this_river) |
GList * | sed_cube_find_river_path (Sed_cube c, Eh_ind_2 *hinge_pos, double angle) |
Eh_ind_2 * | sed_find_river_mouth (Sed_cube c, Eh_ind_2 *hinge_pos, double angle) |
Eh_ind_2 | get_offset_from_angle (double angle, double aspect) |
int | get_path_exit_side (Eh_pt_2 pos_in_box, double angle, double dx, double dy) |
Eh_pt_2 | get_path_exit_pos (Eh_pt_2 pos_in_box, double angle, double dx, double dy) |
Eh_pt_2 | get_path_entrance_pos (Eh_pt_2 exit_pos, double dx, double dy) |
Eh_ind_2 | get_shift_from_exit_pos (Eh_pt_2 exit_pos, double dx, double dy) |
gssize * | sed_cube_river_path_id (Sed_cube c, Sed_riv river, gboolean down_stream) |
GList * | sed_cube_river_path (Sed_cube c, Sed_riv river) |
GList * | sed_cube_find_line_path (Sed_cube c, Eh_ind_2 *hinge_pos, double angle) |
int | is_river_mouth (Eh_ind_2 *shore_pos, Sed_hinge_pt *dir) |
Eh_dbl_grid | sed_get_floor_3_default (int floor_type, int n_x, int n_y) |
double ** | sed_scan_sea_level_curve (const char *file, gint *len, GError **err) |
Eh_sequence * | sed_get_floor_sequence_2 (const char *file, double *y_i, gssize n_yi, GError **error) |
Eh_sequence * | sed_get_floor_sequence_3 (const char *file, double dx, double dy, GError **error) |
Eh_dbl_grid | sed_bathy_grid_scan (const char *file, double dx, double dy, GError **error) |
Eh_dbl_grid | sed_bathy_grid_scan_2d_ascii (const char *file, double dx, double dy, GError **error) |
Eh_dbl_grid | sed_bathy_grid_scan_2d_binary (const char *file, double dx, double dy, GError **error) |
Eh_dbl_grid | sed_bathy_grid_scan_1d_ascii (const char *file, double dx, double dy, GError **error) |
Sed_cube | sed_cube_foreach_river (Sed_cube c, GFunc func, gpointer user_data) |
void | find_river_mouth_helper (Sed_riv this_river, Sed_cube c) |
Sed_cube | sed_cube_find_all_river_mouths (Sed_cube c) |
gssize | sed_cube_write (FILE *fp, const Sed_cube p) |
Sed_cube | sed_cube_read (FILE *fp) |
gssize | sed_cube_column_id (const Sed_cube c, double x, double y) |
gssize * | sed_cube_find_column_below (Sed_cube c, double z) |
gssize * | sed_cube_find_column_above (Sed_cube c, double z) |
int | sed_get_floor_vec (char *filename, double *y, int len, double *z, GError **error) |
GArray * | sed_get_floor (char *file, GArray *y_array, GError **error) |
gssize | sed_cube_id (Sed_cube p, gssize i, gssize j) |
Eh_ind_2 | sed_cube_sub (Sed_cube p, gssize id) |
gboolean | sed_cube_is_in_domain (Sed_cube p, gssize i, gssize j) |
gboolean | sed_cube_is_in_domain_id (Sed_cube p, gssize id) |
gboolean | sed_cube_is_in_domain_pos (Sed_cube c, double x, double y) |
gboolean | sed_cube_is_1d (Sed_cube p) |
gssize | sed_cube_fprint (FILE *fp, Sed_cube c) |
Sed_cell | sed_cube_to_cell (Sed_cube c, Sed_cell d) |
gint | sed_cube_count_above (Sed_cube c, double h) |
double | sed_cube_area_above (Sed_cube c, double h) |
#define DEFAULT_BINS (16) |
#define S_KEY_SUBSIDENCE_TIME "time" |
#define SED_KEY_BATHY_FILE "bathymetry file" |
#define SED_KEY_H_RES "horizontal resolution" |
Definition at line 169 of file sed_cube.c.
#define SED_KEY_LENGTH "basin length" |
Definition at line 170 of file sed_cube.c.
#define SED_KEY_MARGIN_NAME "margin name" |
#define SED_KEY_SEDIMENT_FILE "sediment file" |
#define SED_KEY_V_RES "vertical resolution" |
#define SED_KEY_WIDTH "basin width" |
Definition at line 171 of file sed_cube.c.
#define SED_KEY_X_RES "x resolution" |
#define SED_KEY_Y_RES "y resolution" |
#define VARY_COLS (0) |
Definition at line 1810 of file sed_cube.c.
Referenced by sed_cube_find_shore(), and sed_cube_set_shore().
#define VARY_ROWS (1) |
void __free_slist_ocean_storm_data | ( | Sed_ocean_storm | s, | |
gpointer | user_data | |||
) |
Definition at line 408 of file sed_cube.c.
References sed_ocean_storm_destroy().
Referenced by sed_cube_destroy_storm_list().
Definition at line 1908 of file sed_cube.c.
References Eh_ind_2::i, and Eh_ind_2::j.
Referenced by sed_create_shore_tree(), and sed_find_next_shore().
void find_river_mouth_helper | ( | Sed_riv | this_river, | |
Sed_cube | c | |||
) |
Definition at line 3361 of file sed_cube.c.
References sed_cube_find_river_mouth().
Referenced by sed_cube_find_all_river_mouths().
Eh_ind_2 get_offset_from_angle | ( | double | angle, | |
double | aspect | |||
) |
Definition at line 2423 of file sed_cube.c.
References eh_compare_dbl(), Eh_pt_2::x, and Eh_pt_2::y.
Referenced by sed_cube_find_columns_custom(), and sed_cube_find_line_path().
Definition at line 2389 of file sed_cube.c.
References get_path_exit_side(), Eh_pt_2::x, and Eh_pt_2::y.
Referenced by sed_cube_find_columns_custom(), and sed_cube_find_line_path().
int get_path_exit_side | ( | Eh_pt_2 | pos_in_box, | |
double | angle, | |||
double | dx, | |||
double | dy | |||
) |
Definition at line 2360 of file sed_cube.c.
References eh_require, M_PI, Eh_pt_2::x, and Eh_pt_2::y.
Referenced by get_path_exit_pos().
Definition at line 2451 of file sed_cube.c.
References eh_compare_dbl(), Eh_ind_2::i, Eh_ind_2::j, Eh_pt_2::x, and Eh_pt_2::y.
Referenced by sed_cube_find_columns_custom(), and sed_cube_find_line_path().
int is_river_mouth | ( | Eh_ind_2 * | shore_pos, | |
Sed_hinge_pt * | dir | |||
) |
Definition at line 2594 of file sed_cube.c.
References Sed_hinge_pt::angle, Eh_ind_2::i, Eh_ind_2::j, Sed_hinge_pt::x, and Sed_hinge_pt::y.
gboolean is_shore_cell | ( | Sed_cube | s, | |
gssize | x, | |||
gssize | y | |||
) |
Test if a land cell borders an ocean cell.
s | A pointer to a Sed_cube. | |
x | Index to fast dimension. | |
y | Index to slow dimension. |
Definition at line 1930 of file sed_cube.c.
References eh_clamp, eh_require, and sed_column_is_below().
Referenced by sed_find_next_shore().
Eh_dbl_grid sed_bathy_grid_scan | ( | const char * | file, | |
double | dx, | |||
double | dy, | |||
GError ** | error | |||
) |
Definition at line 3080 of file sed_cube.c.
References eh_require_not_reached, eh_return_val_if_fail, sed_bathy_grid_scan_1d_ascii(), sed_bathy_grid_scan_2d_ascii(), sed_mode_is_2d(), and sed_mode_is_3d().
Referenced by sed_cube_new_from_file().
Eh_dbl_grid sed_bathy_grid_scan_1d_ascii | ( | const char * | file, | |
double | dx, | |||
double | dy, | |||
GError ** | error | |||
) |
Definition at line 3220 of file sed_cube.c.
References eh_dbl_array_is_monotonic_up(), eh_dlm_read_swap(), eh_free_2, eh_grid_data_start(), eh_grid_new, eh_grid_set_y_lin(), eh_grid_y(), eh_return_val_if_fail, interpolate(), SED_CUBE_ERROR, SED_CUBE_ERROR_DATA_BAD_RANGE, SED_CUBE_ERROR_INSUFFICIENT_DATA, SED_CUBE_ERROR_NOT_TWO_COLUMNS, and SED_CUBE_ERROR_TIME_NOT_MONOTONIC.
Referenced by sed_bathy_grid_scan().
Eh_dbl_grid sed_bathy_grid_scan_2d_ascii | ( | const char * | file, | |
double | dx, | |||
double | dy, | |||
GError ** | error | |||
) |
Definition at line 3097 of file sed_cube.c.
References eh_dbl_grid_new_set(), eh_dlm_read(), eh_grid_destroy(), eh_grid_x(), eh_grid_y(), eh_return_val_if_fail, SED_CUBE_ERROR, SED_CUBE_ERROR_TOO_FEW_COLUMNS, and SED_CUBE_ERROR_TOO_FEW_ROWS.
Referenced by sed_bathy_grid_scan().
Eh_dbl_grid sed_bathy_grid_scan_2d_binary | ( | const char * | file, | |
double | dx, | |||
double | dy, | |||
GError ** | error | |||
) |
Definition at line 3147 of file sed_cube.c.
References eh_fopen_error(), eh_grid_data_start(), eh_grid_new, eh_grid_x(), eh_grid_y(), eh_return_val_if_fail, SED_CUBE_ERROR, and SED_CUBE_ERROR_TRUNCATED_FILE.
gssize sed_column_x_index | ( | const Sed_cube | c, | |
double | x | |||
) |
Definition at line 1000 of file sed_cube.c.
References eh_require, sed_column_x_position(), and sed_cube_col_x().
gssize sed_column_y_index | ( | const Sed_cube | c, | |
double | y | |||
) |
Definition at line 1019 of file sed_cube.c.
References eh_require, sed_column_y_position(), and sed_cube_col_y().
GTree* sed_create_shore_tree | ( | GList * | shore | ) |
Sed_cube sed_cube_add | ( | Sed_cube | dest, | |
const Sed_cube | src | |||
) |
Definition at line 1355 of file sed_cube.c.
References eh_free, eh_new, sed_column_add(), sed_column_x_position(), sed_column_y_position(), sed_cube_column_id(), and sed_cube_size().
Referenced by run_debris_flow(), and run_slump().
Sed_cube sed_cube_add_trunk | ( | Sed_cube | s, | |
Sed_riv | new_trunk | |||
) |
Definition at line 1596 of file sed_cube.c.
References sed_cube_create_in_suspension(), and sed_river_attach_susp_grid().
Referenced by avulsion_full(), init_river_data(), and sed_cube_read().
Sed_cube sed_cube_adjust_age | ( | Sed_cube | s, | |
double | dt | |||
) |
Definition at line 1777 of file sed_cube.c.
References sed_cube_set_age().
Referenced by sed_cube_increment_age().
Sed_cube sed_cube_adjust_base_height | ( | Sed_cube | s, | |
gssize | i, | |||
gssize | j, | |||
double | dz | |||
) |
Definition at line 1464 of file sed_cube.c.
References sed_column_base_height(), sed_column_set_base_height(), and sed_cube_col_ij().
Referenced by run_isostasy(), and run_subsidence().
Sed_cube sed_cube_adjust_sea_level | ( | Sed_cube | s, | |
double | dz | |||
) |
Definition at line 1453 of file sed_cube.c.
References sed_cube_set_sea_level().
Referenced by run_xshore().
double sed_cube_age | ( | const Sed_cube | s | ) |
Definition at line 1063 of file sed_cube.c.
Referenced by construct_deposit_array_3(), inflow_deposit_sediment(), muddy(), run_plume_hypo(), run_subsidence(), sakura_deposit_sediment(), sed_epoch_queue_tic(), and sed_process_run().
double sed_cube_age_in_years | ( | const Sed_cube | s | ) |
Definition at line 1068 of file sed_cube.c.
Referenced by bio_run(), diffuse_sediment(), fill_to_bruun(), fill_to_bruun_profile(), init_bbl_data(), init_isostasy_data(), init_quake_data(), init_sea_level_data(), init_storm_data(), init_subsidence_data(), init_xshore_data(), move_sediment(), run_avulsion(), run_bbl(), run_bioturbation(), run_compaction(), run_constants(), run_data_dump(), run_debris_flow(), run_diffusion(), run_failure(), run_flow(), run_isostasy(), run_plume(), run_plume_hypo(), run_quake(), run_river(), run_sea_level(), run_squall(), run_storm(), run_subsidence(), run_tide(), run_xshore(), sed_process_run_now(), sed_tripod_write(), squall(), and thread_compact().
Sed_riv* sed_cube_all_branches | ( | Sed_cube | s | ) |
Definition at line 848 of file sed_cube.c.
References eh_free, eh_strv_concat(), sed_cube_river_list(), and sed_river_branches().
Referenced by run_bbl(), sed_cube_mass_in_suspension(), and sed_cube_write().
Sed_riv* sed_cube_all_leaves | ( | Sed_cube | s | ) |
Definition at line 872 of file sed_cube.c.
References eh_free, eh_strv_concat(), sed_cube_river_list(), and sed_river_leaves().
Referenced by run_erosion(), and run_plume().
Sed_riv* sed_cube_all_rivers | ( | Sed_cube | s | ) |
Sed_riv* sed_cube_all_trunks | ( | Sed_cube | s | ) |
Definition at line 831 of file sed_cube.c.
References eh_strv_append(), and sed_cube_river_list().
Referenced by sed_cube_remove_all_trunks().
double sed_cube_area_above | ( | Sed_cube | c, | |
double | h | |||
) |
Find the area of columns above some elevation
c | A Sed_cube | |
h | The elevation to compare |
Definition at line 3901 of file sed_cube.c.
References eh_require, sed_cube_count_above(), sed_cube_x_res(), and sed_cube_y_res().
Referenced by run_avulsion().
double sed_cube_base_height | ( | const Sed_cube | p, | |
gssize | i, | |||
gssize | j | |||
) |
Definition at line 1149 of file sed_cube.c.
References sed_column_base_height(), and sed_cube_col_ij().
Referenced by fail_check_failure_plane_is_valid(), get_janbu_parameters(), sed_cube_fprint(), sed_cube_min_height(), sed_cube_n_rows_between(), and sed_measure_cube_basement().
Sed_column sed_cube_col | ( | const Sed_cube | s, | |
gssize | ind | |||
) |
Definition at line 486 of file sed_cube.c.
References eh_require, eh_return_val_if_fail, and sed_cube_size().
Referenced by bio_run(), decider(), deposit_in_river(), diffuse_sediment(), erode_profile(), fail_update_fail_profile(), fill_to_bruun(), fill_to_bruun_profile(), get_failure_surface(), get_janbu_parameters(), inflow_deposit_sediment(), inflow_erode_sediment(), init_column(), main(), move_sediment(), muddy(), rain_3(), run_bioturbation(), run_compaction(), run_debris_flow(), run_flow(), run_slump(), sakura_deposit_sediment(), sakura_erode_sediment(), sakura_sed_get_phe(), sed_cube_col_pos(), sed_cube_col_x(), sed_cube_col_y(), sed_cube_mass(), sed_cube_n_rows_between(), sed_cube_property_subgrid(), sed_cube_sediment_mass(), sed_cube_set_dz(), sed_cube_set_sea_level(), sed_cube_set_z_res(), sed_cube_to_cell(), sed_cube_x(), sed_cube_y(), sed_get_phe(), squall(), thread_compact(), and xshore().
Sed_column sed_cube_col_ij | ( | const Sed_cube | s, | |
gssize | i, | |||
gssize | j | |||
) |
Definition at line 497 of file sed_cube.c.
References eh_require, eh_return_val_if_fail, sed_cube_id(), sed_cube_n_x(), and sed_cube_size().
Referenced by add_sediment_from_external_source(), deposit_sediment_helper(), diffuse_sediment_2(), sed_cube_adjust_base_height(), sed_cube_base_height(), sed_cube_col_x_ij(), sed_cube_col_y_ij(), sed_cube_load(), sed_cube_new_from_file(), sed_cube_set_base_height(), sed_cube_top_height(), sed_cube_water_depth(), sed_measure_cube_age(), sed_measure_cube_clay_fraction(), sed_measure_cube_density(), sed_measure_cube_facies(), sed_measure_cube_grain_size(), sed_measure_cube_mud_fraction(), sed_measure_cube_permeability(), sed_measure_cube_porosity(), sed_measure_cube_sand_fraction(), sed_measure_cube_silt_fraction(), and test_2d().
gboolean sed_cube_col_is_empty | ( | const Sed_cube | p, | |
gssize | i, | |||
gssize | j | |||
) |
Definition at line 1144 of file sed_cube.c.
References sed_column_is_empty().
Referenced by sed_measure_cube_age(), sed_measure_cube_clay_fraction(), sed_measure_cube_density(), sed_measure_cube_facies(), sed_measure_cube_grain_size(), sed_measure_cube_mud_fraction(), sed_measure_cube_permeability(), sed_measure_cube_porosity(), sed_measure_cube_sand_fraction(), and sed_measure_cube_silt_fraction().
Sed_column sed_cube_col_pos | ( | const Sed_cube | s, | |
double | x, | |||
double | y | |||
) |
Definition at line 510 of file sed_cube.c.
References sed_cube_col(), and sed_cube_column_id().
Referenced by sakura_sed_add_sediment(), and sakura_sed_remove_sediment().
double sed_cube_col_x | ( | const Sed_cube | s, | |
gssize | id | |||
) |
Definition at line 584 of file sed_cube.c.
References eh_require, sed_column_x_position(), sed_cube_col(), and sed_cube_size().
Referenced by run_bedload(), sed_column_x_index(), sed_cube_property_subgrid(), sed_cube_x_cols_between(), sed_cube_y_cols_between(), sed_tripod_measure(), and sed_tripod_write().
double sed_cube_col_x_ij | ( | const Sed_cube | s, | |
gssize | i, | |||
gssize | j | |||
) |
Definition at line 592 of file sed_cube.c.
References sed_column_x_position(), and sed_cube_col_ij().
double sed_cube_col_y | ( | const Sed_cube | s, | |
gssize | id | |||
) |
Definition at line 597 of file sed_cube.c.
References eh_require, sed_column_y_position(), sed_cube_col(), and sed_cube_size().
Referenced by fill_to_bruun_profile(), get_bruun_a(), get_bruun_y_0(), get_bruun_y_b(), get_bruun_zones(), get_sediment_flux(), get_shoreface_slope(), get_zone_boundaries(), main(), run_bedload(), run_debris_flow(), run_slump(), run_turbidity_inflow(), run_turbidity_sakura(), sed_column_y_index(), sed_cube_fprint(), sed_cube_property_subgrid(), sed_cube_x_cols_between(), sed_cube_y_cols_between(), sed_tripod_measure(), sed_tripod_write(), and update_bruun_zone_data().
double sed_cube_col_y_ij | ( | const Sed_cube | s, | |
gssize | i, | |||
gssize | j | |||
) |
Definition at line 605 of file sed_cube.c.
References sed_column_y_position(), and sed_cube_col_ij().
Sed_cube sed_cube_cols | ( | Sed_cube | src, | |
gssize * | path | |||
) |
Definition at line 1277 of file sed_cube.c.
References eh_require, sed_cube_copy_scalar_data(), sed_cube_new_empty(), and sed_cube_size().
Referenced by deposit_in_river(), erode_river_profile(), and get_zones().
gssize sed_cube_column_id | ( | const Sed_cube | c, | |
double | x, | |||
double | y | |||
) |
Definition at line 3498 of file sed_cube.c.
References eh_grid_sub_to_id(), eh_require, sed_column_x_position(), sed_column_y_position(), sed_cube_is_1d(), and sed_cube_is_in_domain_pos().
Referenced by sakura_sed_get_depth(), sakura_sed_get_phe(), sed_cube_add(), sed_cube_col_pos(), sed_cube_copy_line(), sed_cube_remove(), sed_cube_x_cols_between(), and sed_cube_y_cols_between().
Sed_constants sed_cube_constants | ( | const Sed_cube | s | ) |
Sed_cube sed_cube_copy | ( | Sed_cube | dest, | |
const Sed_cube | src | |||
) |
Copy a sediment cube.
src | The cube to duplicate. | |
dest | Location of the duplicate cube (or NULL to create a cube); |
Definition at line 1176 of file sed_cube.c.
References eh_require, sed_cube_copy_pointer_data(), sed_cube_copy_scalar_data(), and sed_cube_new().
Referenced by sed_cube_dup().
Sed_cube sed_cube_copy_cols | ( | const Sed_cube | src, | |
gssize * | x, | |||
gssize * | y, | |||
double * | z, | |||
gssize | len | |||
) |
Place columns from a Sed_cube into a new 1D Sed_cube
Create a new 1D Sed_cube out of Sed_columns of an existing Sed_cube. Columns are specified by their x and y indices as well as an elevation. Everything above the elevation is copied to a new Sed_column and placed in the new Sed_cube.
src | A Sed_cube | |
x | x-indices of the columns to copy | |
y | y-indices of the columns to copy | |
z | Vertical position of the new column | |
len | Length of x, y, and z |
Definition at line 1205 of file sed_cube.c.
References eh_require, sed_column_height_copy(), sed_cube_copy_scalar_data(), and sed_cube_new().
Referenced by get_failure_surface().
Sed_cube sed_cube_copy_line | ( | const Sed_cube | src, | |
double * | x, | |||
double * | y, | |||
double * | z, | |||
gssize | len | |||
) |
Place columns from a Sed_cube into a new 1D Sed_cube
Create a new 1D Sed_cube out of Sed_columns of an existing Sed_cube. Columns are specified by their x and y positions as well as an elevation. Everything above the elevation is copied to a new Sed_column and placed in the new Sed_cube.
src | A Sed_cube | |
x | x-positions of the columns to copy | |
y | y-positions of the columns to copy | |
z | Vertical position of the new column | |
len | Length of x, y, and z |
Definition at line 1245 of file sed_cube.c.
References eh_free, eh_new, eh_require, sed_column_height_copy(), sed_cube_column_id(), sed_cube_copy_scalar_data(), and sed_cube_new().
Sed_cube sed_cube_copy_pointer_data | ( | Sed_cube | dest, | |
const Sed_cube | src | |||
) |
Definition at line 349 of file sed_cube.c.
References sed_cube_new().
Referenced by sed_cube_copy().
Sed_cube sed_cube_copy_scalar_data | ( | Sed_cube | dest, | |
const Sed_cube | src | |||
) |
Definition at line 324 of file sed_cube.c.
References eh_free, and sed_cube_new().
Referenced by sed_cube_cols(), sed_cube_copy(), sed_cube_copy_cols(), and sed_cube_copy_line().
gint sed_cube_count_above | ( | Sed_cube | c, | |
double | h | |||
) |
Count the number of columns above some elevation
c | A Sed_cube | |
h | The elevation to compare |
Definition at line 3876 of file sed_cube.c.
References eh_require, sed_column_is_above(), and sed_cube_size().
Referenced by sed_cube_area_above().
Sed_cell_grid sed_cube_create_in_suspension | ( | Sed_cube | s | ) |
Definition at line 363 of file sed_cube.c.
References eh_grid_reindex(), sed_cell_grid_init(), sed_cell_grid_new(), and sed_sediment_env_n_types().
Referenced by sed_cube_add_trunk(), and sed_cube_split_river().
Sed_cube sed_cube_destroy | ( | Sed_cube | s | ) |
Definition at line 318 of file sed_cube.c.
References sed_cube_free().
Referenced by get_failure_surface(), run_failure(), sedflux_finalize(), and test_2d().
Sed_cell_grid sed_cube_destroy_in_suspension | ( | Sed_cell_grid | g | ) |
Definition at line 385 of file sed_cube.c.
References eh_grid_destroy(), and sed_cell_grid_free().
Referenced by sed_river_attach_susp_grid().
Sed_cube sed_cube_destroy_storm_list | ( | Sed_cube | c | ) |
Definition at line 413 of file sed_cube.c.
References __free_slist_ocean_storm_data(), and eh_return_val_if_fail.
Referenced by sed_cube_free(), and sed_cube_set_storm_list().
Sed_cube sed_cube_dup | ( | Sed_cube | c | ) |
Duplicate a sediment cube.
c | The cube to duplicate. |
Definition at line 1162 of file sed_cube.c.
References sed_cube_copy().
GQuark sed_cube_error_quark | ( | void | ) |
Definition at line 58 of file sed_cube.c.
Eh_ind_2* sed_cube_find_adjacent_shore_edge | ( | Sed_cube | s, | |
gssize | i, | |||
gssize | j, | |||
int | edge | |||
) |
Definition at line 2009 of file sed_cube.c.
References eh_ind_2_dup(), eh_is_in_domain(), Eh_ind_2::i, Eh_ind_2::j, sed_cube_is_shore_edge(), sed_rotate_direction(), and sed_shift_index_over_edge().
Sed_cube sed_cube_find_all_river_mouths | ( | Sed_cube | c | ) |
Definition at line 3355 of file sed_cube.c.
References find_river_mouth_helper().
Referenced by diffuse_sediment(), and run_sea_level().
gssize* sed_cube_find_column_above | ( | Sed_cube | c, | |
double | z | |||
) |
Definition at line 3544 of file sed_cube.c.
References eh_grid_sub_to_id(), and sed_column_top_height().
Referenced by diffuse_sediment().
gssize* sed_cube_find_column_below | ( | Sed_cube | c, | |
double | z | |||
) |
Definition at line 3525 of file sed_cube.c.
References eh_grid_sub_to_id(), and sed_column_top_height().
GList* sed_cube_find_columns_custom | ( | Sed_cube | s, | |
gssize | i, | |||
gssize | j, | |||
gpointer | data, | |||
Sed_cube_func | stop_func, | |||
Sed_cube_func | angle_func | |||
) |
Definition at line 2130 of file sed_cube.c.
References eh_clamp, eh_is_in_domain(), eh_require, get_path_entrance_pos(), get_path_exit_pos(), get_shift_from_exit_pos(), Eh_ind_2::i, Eh_ind_2::j, Eh_pt_2::x, and Eh_pt_2::y.
GList* sed_cube_find_cross_shore_columns | ( | Sed_cube | s, | |
gssize | i, | |||
gssize | j | |||
) |
Definition at line 2206 of file sed_cube.c.
References eh_sign, sed_cube_find_cross_shore_columns(), sed_cube_slope_vector(), sed_cube_water_depth(), Eh_pt_2::x, and Eh_pt_2::y.
Referenced by sed_cube_find_cross_shore_columns().
GList* sed_cube_find_line_path | ( | Sed_cube | c, | |
Eh_ind_2 * | hinge_pos, | |||
double | angle | |||
) |
Definition at line 2535 of file sed_cube.c.
References eh_ind_2_create(), eh_ind_2_dup(), eh_is_in_domain(), eh_reduce_angle(), eh_require, eh_require_not_reached, get_path_entrance_pos(), get_path_exit_pos(), get_shift_from_exit_pos(), Eh_ind_2::i, Eh_ind_2::j, sed_column_is_above(), sed_column_is_below(), Eh_pt_2::x, and Eh_pt_2::y.
Referenced by sed_cube_find_river_path(), sed_cube_river_path(), and sed_cube_river_path_id().
Sed_riv sed_cube_find_river_mouth | ( | Sed_cube | c, | |
Sed_riv | this_river | |||
) |
Definition at line 2292 of file sed_cube.c.
References eh_free, Eh_ind_2::i, Eh_ind_2::j, sed_find_river_mouth(), sed_river_angle(), sed_river_hinge(), and sed_river_set_mouth().
Referenced by deposit_sediment_helper(), find_river_mouth_helper(), rain_sediment_3(), and sed_cube_avulse_river().
GList* sed_cube_find_river_path | ( | Sed_cube | c, | |
Eh_ind_2 * | hinge_pos, | |||
double | angle | |||
) |
Definition at line 2311 of file sed_cube.c.
References sed_cube_find_line_path().
Referenced by sed_find_river_mouth().
Eh_ind_2* sed_cube_find_shore | ( | Sed_cube | s, | |
int | n, | |||
int | vary_dim | |||
) |
Look for a transition from land to sea.
s | A pointer to a Sed_cube. | |
n | The row or column to look along. | |
vary_dim | The dimension along which to look. |
Definition at line 2240 of file sed_cube.c.
References eh_new, Eh_ind_2::i, Eh_ind_2::j, sed_column_is_below(), and VARY_COLS.
Referenced by sed_cube_set_shore().
int sed_cube_find_shore_edge | ( | Sed_cube | s, | |
gssize | i, | |||
gssize | j | |||
) |
Definition at line 1968 of file sed_cube.c.
References eh_is_in_domain(), eh_require, S_EAST_EDGE, S_NORTH_EDGE, S_SOUTH_EDGE, S_WEST_EDGE, and sed_column_is_below().
GList* sed_cube_find_shore_line | ( | Sed_cube | s, | |
Eh_ind_2 * | pos | |||
) |
Definition at line 1853 of file sed_cube.c.
References sed_find_next_shore().
Referenced by sed_cube_set_shore().
Sed_cube sed_cube_foreach_river | ( | Sed_cube | c, | |
GFunc | func, | |||
gpointer | user_data | |||
) |
gssize sed_cube_fprint | ( | FILE * | fp, | |
Sed_cube | c | |||
) |
Definition at line 3801 of file sed_cube.c.
References sed_cube_base_height(), sed_cube_col_y(), sed_cube_n_x(), sed_cube_n_y(), sed_cube_name(), sed_cube_size(), sed_cube_x_res(), sed_cube_y_res(), and sed_cube_z_res().
Sed_cube sed_cube_free | ( | Sed_cube | s, | |
gboolean | free_data | |||
) |
Definition at line 275 of file sed_cube.c.
References eh_free, sed_cell_destroy(), sed_column_destroy(), sed_cube_destroy_storm_list(), sed_cube_remove_all_trunks(), and sed_cube_size().
Referenced by deposit_in_river(), erode_river_profile(), sed_cube_destroy(), and xshore().
Sed_cube sed_cube_free_river | ( | Sed_cube | p | ) |
Eh_dbl_grid sed_cube_grid | ( | const Sed_cube | s, | |
Sed_grid_func | func, | |||
gssize * | index | |||
) |
Definition at line 711 of file sed_cube.c.
References eh_dbl_grid_set_val(), eh_grid_n_x(), eh_grid_n_y(), eh_grid_new, and eh_require.
Referenced by sed_cube_load_grid(), sed_cube_slope_dir_grid(), sed_cube_thickness_grid(), sed_cube_water_depth_grid(), sed_cube_x_slope_grid(), and sed_cube_y_slope_grid().
gssize sed_cube_id | ( | Sed_cube | p, | |
gssize | i, | |||
gssize | j | |||
) |
Get index from subscripts for a Sed_cube
p | A Sed_cube | |
i | First (slow) subscript | |
j | Second (fast) subscript |
Definition at line 3728 of file sed_cube.c.
References eh_grid_sub_to_id().
Referenced by sed_cube_col_ij(), and sed_cube_property_subgrid().
Sed_cell_grid sed_cube_in_suspension | ( | Sed_cube | s, | |
Sed_riv | river | |||
) |
Definition at line 811 of file sed_cube.c.
References eh_return_val_if_fail, and sed_river_get_susp_grid().
Referenced by construct_deposit_array_3(), deposit_in_ocean(), rain_sediment_3(), run_bbl(), and run_plume_hypo().
Sed_cube sed_cube_increment_age | ( | Sed_cube | s | ) |
Definition at line 1782 of file sed_cube.c.
References sed_cube_adjust_age(), and sed_cube_time_step().
Referenced by sed_process_queue_run_until().
gboolean sed_cube_is_1d | ( | Sed_cube | p | ) |
Definition at line 3794 of file sed_cube.c.
References eh_return_val_if_fail.
Referenced by decider(), diffuse_sediment(), fail_check_failure_plane_is_valid(), fail_get_failure_line(), fail_reinit_fail_profile(), get_circle(), get_ellipse(), get_factor_of_safety(), get_tsunami_parameters(), get_zones(), sed_cube_column_id(), sed_cube_is_in_domain_pos(), and xshore().
gboolean sed_cube_is_in_domain | ( | Sed_cube | p, | |
gssize | i, | |||
gssize | j | |||
) |
Is i-j subscript within the domain of a Sed_cube
p | A Sed_cube | |
i | i-subscript | |
j | j-subscript |
Definition at line 3754 of file sed_cube.c.
References eh_is_in_domain().
Referenced by deposit_sediment_helper(), diffuse_sediment_2(), rain_sediment_3(), sakura_sed_get_phe(), sed_measure_cube_age(), sed_measure_cube_basement(), sed_measure_cube_clay_fraction(), sed_measure_cube_density(), sed_measure_cube_elevation(), sed_measure_cube_facies(), sed_measure_cube_grain_size(), sed_measure_cube_mud_fraction(), sed_measure_cube_permeability(), sed_measure_cube_porosity(), sed_measure_cube_river_mouth(), sed_measure_cube_sand_fraction(), sed_measure_cube_silt_fraction(), sed_measure_cube_slope(), sed_measure_cube_thickness(), sed_measure_cube_water_depth(), and sed_tripod_measure().
gboolean sed_cube_is_in_domain_id | ( | Sed_cube | p, | |
gssize | id | |||
) |
Is id within the domain of a Sed_cube
p | A Sed_cube | |
id | One-dimensional id |
Definition at line 3767 of file sed_cube.c.
References eh_return_val_if_fail, and sed_cube_size().
Referenced by run_plume_hyper_inflow(), and run_plume_hyper_sakura().
gboolean sed_cube_is_in_domain_pos | ( | Sed_cube | c, | |
double | x, | |||
double | y | |||
) |
Definition at line 3774 of file sed_cube.c.
References eh_return_val_if_fail, sed_column_x_position(), sed_column_y_position(), and sed_cube_is_1d().
Referenced by sed_cube_column_id().
gboolean sed_cube_is_shore_edge | ( | Sed_cube | s, | |
gssize | i, | |||
gssize | j, | |||
int | edge | |||
) |
Check if the specified edge is a shore edge.
Check if the is a shift from above (below) sea level to below (above) sea level by moving over the given cell's edge.
s | A pointer to a Sed_cube. | |
i | First index to a cell of a Sed_cube. | |
j | Second index to a cell of a Sed_cube. | |
edge | An edge of a cell. |
Definition at line 2088 of file sed_cube.c.
References eh_is_in_domain(), Eh_ind_2::i, Eh_ind_2::j, sed_column_is_below(), and sed_shift_index_over_edge().
Referenced by sed_cube_find_adjacent_shore_edge().
double sed_cube_load | ( | const Sed_cube | p, | |
gssize | i, | |||
gssize | j | |||
) |
Definition at line 1122 of file sed_cube.c.
References eh_require, sed_column_load_at(), sed_cube_col_ij(), and sed_cube_water_pressure().
Eh_dbl_grid sed_cube_load_grid | ( | const Sed_cube | s, | |
gssize * | index | |||
) |
Definition at line 765 of file sed_cube.c.
References S_LOAD_FUNC, and sed_cube_grid().
Referenced by init_isostasy_data(), and run_isostasy().
double sed_cube_mass | ( | const Sed_cube | p | ) |
Definition at line 1376 of file sed_cube.c.
References sed_column_mass(), sed_cube_col(), sed_cube_size(), sed_cube_x_res(), and sed_cube_y_res().
Referenced by diffuse_cols(), main(), run_debris_flow(), run_xshore(), sed_process_run_now(), and xshore().
double sed_cube_mass_in_suspension | ( | const Sed_cube | p | ) |
Definition at line 1412 of file sed_cube.c.
References eh_free, sed_cell_grid_mass(), sed_cube_all_branches(), SED_CUBE_SUSP_GRID, sed_cube_x_res(), and sed_cube_y_res().
Referenced by run_bbl(), and sed_process_run_now().
gint sed_cube_n_branches | ( | Sed_cube | s | ) |
Definition at line 913 of file sed_cube.c.
References eh_return_val_if_fail, sed_cube_n_rivers(), and sed_river_n_branches().
Referenced by run_avulsion(), and sed_cube_write().
gint sed_cube_n_rivers | ( | Sed_cube | s | ) |
Definition at line 928 of file sed_cube.c.
References eh_return_val_if_fail.
Referenced by run_bbl(), sed_cube_n_branches(), and sed_measure_cube_river_mouth().
gssize sed_cube_n_x | ( | const Sed_cube | s | ) |
Definition at line 473 of file sed_cube.c.
References eh_return_val_if_fail.
Referenced by add_sediment_from_external_source(), avulsion_full(), construct_deposit_array_3(), diffuse_sediment_2(), init_isostasy_data(), init_met_station_data(), init_plume_hypo_data(), rain_sediment_3(), run_bedload(), run_isostasy(), run_plume_hypo(), run_subsidence(), sed_cube_col_ij(), sed_cube_fprint(), and sed_cube_new_from_file().
gssize sed_cube_n_y | ( | const Sed_cube | s | ) |
Definition at line 479 of file sed_cube.c.
References eh_return_val_if_fail.
Referenced by add_sediment_from_external_source(), avulsion_full(), construct_deposit_array_3(), decider(), diffuse_cols(), diffuse_sediment(), diffuse_sediment_2(), fail_check_failure_plane_is_valid(), fail_get_failure_line(), fail_reinit_fail_profile(), fill_to_bruun(), fill_to_bruun_profile(), get_bruun_a(), get_bruun_y_b(), get_circle(), get_factor_of_safety(), get_failure_surface(), get_janbu_parameters(), get_max_erosion_profile(), get_sediment_flux(), get_tsunami_parameters(), get_zone_boundaries(), get_zone_indices(), get_zones(), inflow_set_width_from_cube(), init_bbl_data(), init_isostasy_data(), init_met_station_data(), init_plume_hypo_data(), init_subsidence_data(), main(), move_sediment(), muddy(), rain_sediment_3(), run_bedload(), run_debris_flow(), run_isostasy(), run_plume_hypo(), run_slump(), run_subsidence(), run_turbidity_inflow(), run_turbidity_sakura(), sakura_set_width_from_cube(), sed_cube_fprint(), sed_cube_new_from_file(), sed_get_phe(), squall(), and xshore().
char* sed_cube_name | ( | const Sed_cube | s | ) |
Definition at line 461 of file sed_cube.c.
References eh_return_val_if_fail.
Referenced by init_cpr_data(), run_data_dump(), and sed_cube_fprint().
Sed_cube sed_cube_new | ( | gssize | n_x, | |
gssize | n_y | |||
) |
Definition at line 93 of file sed_cube.c.
References DEFAULT_BINS, sed_column_new(), sed_column_set_x_position(), sed_column_set_y_position(), and sed_cube_new_empty().
Referenced by avulsion_full(), main(), sed_cube_copy(), sed_cube_copy_cols(), sed_cube_copy_line(), sed_cube_copy_pointer_data(), sed_cube_copy_scalar_data(), sed_cube_new_from_file(), sed_cube_set_bathy(), and test_2d().
Sed_cube sed_cube_new_empty | ( | gssize | n_x, | |
gssize | n_y | |||
) |
Definition at line 116 of file sed_cube.c.
References eh_new, eh_return_val_if_fail, NEW_OBJECT, and sed_cell_new_env().
Referenced by sed_cube_cols(), and sed_cube_new().
Sed_cube sed_cube_new_from_file | ( | const gchar * | file, | |
GError ** | error | |||
) |
Definition at line 176 of file sed_cube.c.
References eh_dbl_grid_val(), eh_free, eh_grid_destroy(), eh_grid_n_x(), eh_grid_n_y(), eh_grid_x(), eh_grid_y(), eh_key_file_destroy(), eh_key_file_get_dbl_value(), eh_key_file_get_value(), eh_key_file_scan(), eh_return_val_if_fail, sed_bathy_grid_scan(), sed_column_set_base_height(), sed_column_set_x_position(), sed_column_set_y_position(), sed_cube_col_ij(), sed_cube_n_x(), sed_cube_n_y(), sed_cube_new(), sed_cube_set_name(), sed_cube_set_x_res(), sed_cube_set_y_res(), sed_cube_set_z_res(), SED_KEY_BATHY_FILE, SED_KEY_MARGIN_NAME, SED_KEY_SEDIMENT_FILE, SED_KEY_V_RES, SED_KEY_X_RES, SED_KEY_Y_RES, sed_sediment_destroy(), sed_sediment_scan(), and sed_sediment_set_env().
Referenced by sedflux_init().
Sed_riv sed_cube_nth_river | ( | Sed_cube | s, | |
gint | n | |||
) |
Definition at line 1659 of file sed_cube.c.
Referenced by avulsion_full(), and sed_measure_cube_river_mouth().
gssize sed_cube_number_of_rivers | ( | Sed_cube | s | ) |
double sed_cube_quake | ( | const Sed_cube | s | ) |
Sed_cube sed_cube_read | ( | FILE * | fp | ) |
Read a Sed_cube from a binary file.
fp | A pointer to an open file. |
Definition at line 3443 of file sed_cube.c.
References eh_grid_copy(), eh_grid_destroy(), eh_grid_load(), eh_new, eh_require, NEW_OBJECT, sed_cell_read(), sed_column_read(), sed_cube_add_trunk(), sed_cube_set_shore(), sed_river_fread(), sed_river_get_susp_grid(), and sed_river_new().
Referenced by fail_load_fail_profile(), load_debris_flow_data(), and load_turbidity_current_data().
Sed_cube sed_cube_remove | ( | Sed_cube | dest, | |
Sed_cube | src | |||
) |
Definition at line 1334 of file sed_cube.c.
References eh_free, eh_new, sed_column_remove(), sed_column_x_position(), sed_column_y_position(), sed_cube_column_id(), and sed_cube_size().
Referenced by run_failure().
Sed_cube sed_cube_remove_all_trunks | ( | Sed_cube | s | ) |
Definition at line 1626 of file sed_cube.c.
References eh_free, eh_require, sed_cube_all_trunks(), and sed_cube_remove_river().
Referenced by sed_cube_free().
Sed_cube sed_cube_remove_river | ( | Sed_cube | s, | |
Sed_riv | r | |||
) |
Definition at line 1608 of file sed_cube.c.
References sed_cube_remove_river(), sed_river_destroy(), sed_river_detach_susp_grid(), sed_river_left(), and sed_river_right().
Referenced by sed_cube_remove_all_trunks(), and sed_cube_remove_river().
Sed_riv sed_cube_river_by_name | ( | Sed_cube | s, | |
const char * | name | |||
) |
Definition at line 771 of file sed_cube.c.
References sed_river_name_cmp().
Referenced by init_avulsion_data(), run_avulsion(), run_bedload(), and sed_cube_split_river().
gssize sed_cube_river_id | ( | Sed_cube | s, | |
Sed_riv | river | |||
) |
Definition at line 805 of file sed_cube.c.
GList* sed_cube_river_list | ( | Sed_cube | s | ) |
Definition at line 825 of file sed_cube.c.
Referenced by deposit_sediment_at_river_mouth(), sed_cube_all_branches(), sed_cube_all_leaves(), sed_cube_all_rivers(), sed_cube_all_trunks(), sed_merge_all_rivers(), and sed_split_all_rivers().
gssize sed_cube_river_mouth_1d | ( | Sed_cube | c | ) |
Definition at line 1306 of file sed_cube.c.
References eh_clamp, eh_require, and sed_cube_water_depth().
Referenced by deposit_in_river(), erode_profile(), fail_examine_fail_profile(), get_bruun_zones(), main(), muddy(), run_bedload(), run_plume_hyper_inflow(), and run_plume_hyper_sakura().
Eh_pt_2* sed_cube_river_mouth_position | ( | Sed_cube | s, | |
Sed_riv | this_river | |||
) |
Definition at line 1489 of file sed_cube.c.
References eh_create_pt_2(), eh_destroy_polygon(), eh_find_polygon_crossings(), eh_get_rectangle_polygon(), eh_require, eh_require_not_reached, Eh_ind_2::i, Eh_ind_2::j, POLYGON_IN_CROSSINGS, sed_cube_x_res(), sed_cube_y_res(), sed_river_angle(), sed_river_hinge(), and sed_river_mouth().
Referenced by run_bedload().
GList* sed_cube_river_path | ( | Sed_cube | c, | |
Sed_riv | river | |||
) |
Definition at line 2526 of file sed_cube.c.
References sed_cube_find_line_path(), sed_river_angle(), and sed_river_hinge().
gssize* sed_cube_river_path_id | ( | Sed_cube | c, | |
Sed_riv | river, | |||
gboolean | down_stream | |||
) |
Definition at line 2480 of file sed_cube.c.
References eh_free, eh_grid_sub_to_id(), eh_new, eh_require, sed_cube_find_line_path(), sed_river_angle(), and sed_river_hinge().
Referenced by deposit_in_river(), and erode_river_profile().
double sed_cube_sea_level | ( | const Sed_cube | s | ) |
Definition at line 524 of file sed_cube.c.
References eh_return_val_if_fail.
Referenced by diffuse_sediment(), get_bruun_zones(), rain_sediment_3(), run_avulsion(), run_isostasy(), run_new_process(), run_sea_level(), run_xshore(), and sed_property_file_header_new().
double sed_cube_sediment_mass | ( | const Sed_cube | p | ) |
Definition at line 1394 of file sed_cube.c.
References eh_require, sed_column_sediment_mass(), sed_cube_col(), sed_cube_size(), sed_cube_x_res(), and sed_cube_y_res().
Referenced by _sed_diag_mass().
Sed_cube sed_cube_set_age | ( | Sed_cube | s, | |
double | new_age | |||
) |
Definition at line 1768 of file sed_cube.c.
References eh_require.
Referenced by run_xshore(), sed_cube_adjust_age(), and sed_process_queue_run_until().
Sed_cube sed_cube_set_base_height | ( | Sed_cube | s, | |
gssize | i, | |||
gssize | j, | |||
double | height | |||
) |
Definition at line 1458 of file sed_cube.c.
References sed_column_set_base_height(), and sed_cube_col_ij().
Referenced by test_2d().
Sed_cube sed_cube_set_bathy | ( | Sed_cube | c, | |
Eh_dbl_grid | g | |||
) |
Definition at line 426 of file sed_cube.c.
References eh_dbl_grid_val(), eh_grid_n_x(), eh_grid_n_y(), eh_require, eh_return_val_if_fail, sed_column_set_base_height(), and sed_cube_new().
Referenced by avulsion_full().
Sed_cube sed_cube_set_dz | ( | Sed_cube | p, | |
double | new_dz | |||
) |
Definition at line 447 of file sed_cube.c.
References eh_return_val_if_fail, sed_column_set_z_res(), sed_cube_col(), and sed_cube_size().
Referenced by avulsion_full().
Sed_cube sed_cube_set_name | ( | Sed_cube | s, | |
char * | name | |||
) |
Definition at line 1676 of file sed_cube.c.
References eh_free, and eh_require.
Referenced by sed_cube_new_from_file().
Sed_cube sed_cube_set_nth_river | ( | Sed_cube | s, | |
gssize | n, | |||
Sed_riv | new_river | |||
) |
Sed_cube sed_cube_set_quake | ( | Sed_cube | s, | |
double | new_quake_value | |||
) |
Sed_cube sed_cube_set_river_list | ( | Sed_cube | s, | |
GList * | river_list | |||
) |
Definition at line 1546 of file sed_cube.c.
Referenced by sed_merge_all_rivers(), and sed_split_all_rivers().
Sed_cube sed_cube_set_sea_level | ( | Sed_cube | s, | |
double | new_sea_level | |||
) |
Definition at line 1440 of file sed_cube.c.
References sed_column_set_sea_level(), sed_cube_col(), and sed_cube_size().
Referenced by get_bruun_zones(), main(), rain_sediment_3(), run_new_process(), run_sea_level(), run_xshore(), and sed_cube_adjust_sea_level().
void sed_cube_set_shore | ( | Sed_cube | s | ) |
Definition at line 1813 of file sed_cube.c.
References sed_cube_find_shore(), sed_cube_find_shore_line(), VARY_COLS, and VARY_ROWS.
Referenced by sed_cube_read().
Sed_cube sed_cube_set_storm | ( | Sed_cube | s, | |
double | new_storm_value | |||
) |
Sed_cube sed_cube_set_storm_list | ( | Sed_cube | c, | |
GSList * | storms | |||
) |
Definition at line 401 of file sed_cube.c.
References sed_cube_destroy_storm_list().
Referenced by run_storm().
Sed_cube sed_cube_set_tidal_period | ( | Sed_cube | s, | |
double | new_val | |||
) |
Sed_cube sed_cube_set_tidal_range | ( | Sed_cube | s, | |
double | new_val | |||
) |
Sed_cube sed_cube_set_time_step | ( | Sed_cube | s, | |
double | time_step_in_years | |||
) |
Definition at line 1686 of file sed_cube.c.
References eh_require.
Referenced by main(), run_river(), sed_epoch_queue_run(), and sed_epoch_queue_tic().
Sed_cube sed_cube_set_wave_height | ( | Sed_cube | s, | |
double | new_wave_height | |||
) |
Sed_cube sed_cube_set_wave_length | ( | Sed_cube | s, | |
double | new_wave_length | |||
) |
Sed_cube sed_cube_set_wave_period | ( | Sed_cube | s, | |
double | new_wave_period | |||
) |
Definition at line 1741 of file sed_cube.c.
Sed_cube sed_cube_set_x_res | ( | Sed_cube | s, | |
double | new_x_res | |||
) |
Definition at line 1704 of file sed_cube.c.
References eh_require.
Referenced by deposit_in_river(), erode_river_profile(), main(), sed_cube_new_from_file(), and test_2d().
Sed_cube sed_cube_set_y_res | ( | Sed_cube | s, | |
double | new_y_res | |||
) |
Definition at line 1713 of file sed_cube.c.
References eh_require.
Referenced by deposit_in_river(), erode_river_profile(), main(), sed_cube_new_from_file(), and test_2d().
Sed_cube sed_cube_set_z_res | ( | Sed_cube | s, | |
double | new_z_res | |||
) |
Definition at line 1722 of file sed_cube.c.
References eh_require, sed_column_set_z_res(), sed_cube_col(), and sed_cube_size().
Referenced by main(), and sed_cube_new_from_file().
gssize sed_cube_size | ( | const Sed_cube | s | ) |
Definition at line 467 of file sed_cube.c.
References eh_return_val_if_fail.
Referenced by bio_run(), inflow_set_bathy_data_from_cube(), init_met_station_data(), rain_3(), run_bioturbation(), run_compaction(), run_flow(), run_isostasy(), sakura_set_bathy_data_from_cube(), sed_cube_add(), sed_cube_col(), sed_cube_col_ij(), sed_cube_col_x(), sed_cube_col_y(), sed_cube_cols(), sed_cube_count_above(), sed_cube_fprint(), sed_cube_free(), sed_cube_is_in_domain_id(), sed_cube_mass(), sed_cube_max_height(), sed_cube_min_height(), sed_cube_property_subgrid(), sed_cube_remove(), sed_cube_sediment_mass(), sed_cube_set_dz(), sed_cube_set_sea_level(), sed_cube_set_z_res(), sed_cube_to_cell(), sed_cube_write(), sed_cube_x_cols_between(), sed_cube_y_cols_between(), and sed_tripod_write().
double sed_cube_slope | ( | const Sed_cube | s, | |
gssize | i, | |||
gssize | j | |||
) |
Definition at line 664 of file sed_cube.c.
References sed_cube_x_slope(), and sed_cube_y_slope().
Referenced by muddy(), and sed_measure_cube_slope().
double sed_cube_slope_dir | ( | const Sed_cube | s, | |
gssize | i, | |||
gssize | j | |||
) |
Definition at line 674 of file sed_cube.c.
References sed_cube_x_slope(), and sed_cube_y_slope().
Referenced by run_plume_hypo().
Eh_dbl_grid sed_cube_slope_dir_grid | ( | const Sed_cube | s, | |
gssize * | index | |||
) |
Definition at line 740 of file sed_cube.c.
References S_SLOPE_DIR_FUNC, and sed_cube_grid().
Referenced by diffuse_sediment_2().
Eh_pt_2 sed_cube_slope_vector | ( | const Sed_cube | s, | |
gssize | i, | |||
gssize | j | |||
) |
Definition at line 684 of file sed_cube.c.
References eh_require, sed_cube_x_slope(), sed_cube_y_slope(), Eh_pt_2::x, and Eh_pt_2::y.
Referenced by sed_cube_find_cross_shore_columns().
Sed_cube sed_cube_split_river | ( | Sed_cube | s, | |
const gchar * | name | |||
) |
Definition at line 1553 of file sed_cube.c.
References sed_cube_create_in_suspension(), sed_cube_river_by_name(), sed_river_attach_susp_grid(), sed_river_left(), sed_river_longest_branch(), sed_river_right(), and sed_river_split().
Referenced by run_avulsion().
double sed_cube_storm | ( | const Sed_cube | s | ) |
GSList* sed_cube_storm_list | ( | Sed_cube | c | ) |
Definition at line 395 of file sed_cube.c.
References eh_return_val_if_fail.
Referenced by run_xshore().
Eh_ind_2 sed_cube_sub | ( | Sed_cube | p, | |
gssize | id | |||
) |
Get subscripts from an id for a Sed_cube
p | A Sed_cube | |
id | A one-dimensional index |
Definition at line 3740 of file sed_cube.c.
References eh_grid_id_to_sub().
Referenced by sed_cube_x_cols_between(), and sed_cube_y_cols_between().
GQuark sed_cube_susp_grid_quark | ( | void | ) |
Definition at line 52 of file sed_cube.c.
double sed_cube_thickness | ( | const Sed_cube | p, | |
gssize | i, | |||
gssize | j | |||
) |
Definition at line 1138 of file sed_cube.c.
References sed_column_thickness().
Referenced by decider(), get_failure_surface(), get_janbu_parameters(), get_tsunami_parameters(), run_debris_flow(), sakura_sed_get_phe(), sed_cube_to_cell(), sed_get_phe(), and sed_measure_cube_thickness().
Eh_dbl_grid sed_cube_thickness_grid | ( | const Sed_cube | s, | |
gssize * | index | |||
) |
double sed_cube_tidal_period | ( | const Sed_cube | s | ) |
Definition at line 1073 of file sed_cube.c.
double sed_cube_tidal_range | ( | const Sed_cube | s | ) |
double sed_cube_time_step | ( | const Sed_cube | s | ) |
Definition at line 940 of file sed_cube.c.
References eh_require.
Referenced by sed_cube_increment_age(), and sed_process_queue_run_until().
double sed_cube_time_step_in_days | ( | const Sed_cube | s | ) |
Definition at line 958 of file sed_cube.c.
References eh_require, and S_DAYS_PER_YEAR.
Referenced by diffuse_profile(), rain_sediment_3(), run_bedload(), run_diffusion(), run_plume_hypo(), and run_tide().
double sed_cube_time_step_in_seconds | ( | const Sed_cube | s | ) |
Definition at line 952 of file sed_cube.c.
References eh_require, and S_SECONDS_PER_YEAR.
Referenced by bio_run(), run_bedload(), run_bioturbation(), run_plume_hypo(), and run_river().
double sed_cube_time_step_in_years | ( | const Sed_cube | s | ) |
Sed_cell sed_cube_to_add | ( | const Sed_cube | s | ) |
Definition at line 3842 of file sed_cube.c.
References sed_cell_add(), sed_cell_clear(), sed_cell_destroy(), sed_cell_new_env(), sed_column_top(), sed_cube_col(), sed_cube_size(), and sed_cube_thickness().
Referenced by run_turbidity_inflow(), and run_turbidity_sakura().
Sed_cell sed_cube_to_remove | ( | const Sed_cube | s | ) |
double sed_cube_top_height | ( | const Sed_cube | p, | |
gssize | i, | |||
gssize | j | |||
) |
Definition at line 696 of file sed_cube.c.
References sed_column_top_height(), and sed_cube_col_ij().
Referenced by diffuse_sediment(), erode_profile(), fail_check_failure_plane_is_valid(), fail_get_janbu_parameters(), get_circle(), get_ellipse(), get_failure_surface(), sed_cube_max_height(), and sed_measure_cube_elevation().
double sed_cube_water_depth | ( | const Sed_cube | p, | |
gssize | i, | |||
gssize | j | |||
) |
Definition at line 1095 of file sed_cube.c.
References eh_require, sed_column_water_depth(), and sed_cube_col_ij().
Referenced by add_sediment_from_external_source(), avulsion_full(), construct_deposit_array_3(), diffuse_sediment(), diffuse_sediment_2(), fill_to_bruun(), fill_to_bruun_profile(), get_bruun_a(), get_erosion_rate_from_profile(), get_max_erosion_profile(), get_shoreface_slope(), get_tsunami_parameters(), get_zone_boundaries(), main(), move_sediment(), muddy(), rain_sediment_3(), run_debris_flow(), run_failure(), sakura_sed_get_depth(), sed_cube_find_cross_shore_columns(), sed_cube_river_mouth_1d(), sed_cube_water_pressure(), sed_cube_x_slope(), sed_cube_y_slope(), sed_cube_y_slope_fast(), sed_measure_cube_water_depth(), squall(), test_2d(), update_bruun_zone_data(), and xshore().
Eh_dbl_grid sed_cube_water_depth_grid | ( | const Sed_cube | s, | |
gssize * | index | |||
) |
Definition at line 755 of file sed_cube.c.
References S_WATER_DEPTH_FUNC, and sed_cube_grid().
Referenced by diffuse_sediment_2(), get_sediment_flux(), inflow_set_bathy_data_from_cube(), and sakura_set_bathy_data_from_cube().
double sed_cube_water_pressure | ( | const Sed_cube | p, | |
gssize | i, | |||
gssize | j | |||
) |
Definition at line 1106 of file sed_cube.c.
References eh_require, sed_cube_water_depth(), sed_gravity(), and sed_rho_sea_water().
Referenced by init_isostasy_data(), run_isostasy(), and sed_cube_load().
double sed_cube_wave_height | ( | const Sed_cube | s | ) |
Definition at line 1038 of file sed_cube.c.
Referenced by get_erosion_rate_from_profile(), run_squall(), and squall().
double sed_cube_wave_length | ( | const Sed_cube | s | ) |
double sed_cube_wave_period | ( | const Sed_cube | s | ) |
gssize sed_cube_write | ( | FILE * | fp, | |
const Sed_cube | p | |||
) |
Write a Sed_cube to a binary file.
fp | A pointer to an open file. | |
p | A pointer to a Sed_cube . |
Definition at line 3374 of file sed_cube.c.
References eh_free, eh_grid_dump(), sed_cell_write(), sed_column_write(), sed_cube_all_branches(), sed_cube_n_branches(), sed_cube_size(), sed_river_fwrite(), and sed_river_get_susp_grid().
Referenced by dump_debris_flow_data(), dump_turbidity_current_data(), fail_dump_fail_profile(), and run_cpr().
double* sed_cube_x | ( | const Sed_cube | s, | |
gssize * | id | |||
) |
Definition at line 530 of file sed_cube.c.
References eh_new, eh_return_val_if_fail, sed_column_x_position(), and sed_cube_col().
double sed_cube_x_res | ( | const Sed_cube | s | ) |
Definition at line 970 of file sed_cube.c.
References eh_require.
Referenced by add_sediment_from_external_source(), deposit_in_ocean(), deposit_in_river(), diffuse_cols(), diffuse_profile(), diffuse_sediment_2(), erode_profile(), erode_river_profile(), inflow_deposit_sediment(), inflow_erode_sediment(), inflow_set_width_from_cube(), init_bbl_data(), init_subsidence_data(), main(), run_bedload(), run_isostasy(), run_plume_hypo(), run_river(), run_turbidity_inflow(), run_turbidity_sakura(), run_xshore(), sakura_deposit_sediment(), sakura_erode_sediment(), sakura_sed_add_sediment(), sakura_sed_get_phe(), sakura_sed_remove_sediment(), sakura_set_width_from_cube(), sed_cube_area_above(), sed_cube_fprint(), sed_cube_mass(), sed_cube_mass_in_suspension(), sed_cube_property_subgrid(), sed_cube_river_mouth_position(), sed_cube_sediment_mass(), sed_cube_x_slope(), sed_property_file_header_new(), sed_tripod_measure(), and xshore().
double sed_cube_x_slope | ( | const Sed_cube | s, | |
gssize | i, | |||
gssize | j | |||
) |
Definition at line 610 of file sed_cube.c.
References eh_is_in_domain(), eh_require, sed_cube_water_depth(), and sed_cube_x_res().
Referenced by sed_cube_slope(), sed_cube_slope_dir(), and sed_cube_slope_vector().
Eh_dbl_grid sed_cube_x_slope_grid | ( | const Sed_cube | s, | |
gssize * | index | |||
) |
Definition at line 745 of file sed_cube.c.
References S_X_SLOPE_FUNC, and sed_cube_grid().
Referenced by diffuse_sediment_2().
double* sed_cube_y | ( | const Sed_cube | s, | |
gssize * | id | |||
) |
Definition at line 557 of file sed_cube.c.
References eh_new, eh_return_val_if_fail, sed_column_y_position(), and sed_cube_col().
Referenced by inflow_set_bathy_data_from_cube(), init_bbl_data(), init_subsidence_data(), sakura_set_bathy_data_from_cube(), and xshore().
double sed_cube_y_res | ( | const Sed_cube | s | ) |
Definition at line 976 of file sed_cube.c.
References eh_require.
Referenced by add_sediment_from_external_source(), deposit_in_ocean(), deposit_in_river(), diffuse_cols(), diffuse_profile(), diffuse_sediment(), diffuse_sediment_2(), erode_profile(), erode_river_profile(), get_bruun_a(), get_bruun_y_0(), get_circle(), get_ellipse(), get_janbu_parameters(), get_sediment_flux(), get_time_step(), get_tsunami_parameters(), inflow_deposit_sediment(), inflow_erode_sediment(), inflow_set_width_from_cube(), init_bbl_data(), init_subsidence_data(), main(), muddy(), run_bedload(), run_debris_flow(), run_isostasy(), run_plume_hypo(), run_river(), run_turbidity_inflow(), run_turbidity_sakura(), run_xshore(), sakura_deposit_sediment(), sakura_erode_sediment(), sakura_sed_add_sediment(), sakura_sed_get_phe(), sakura_sed_remove_sediment(), sakura_set_width_from_cube(), sed_cube_area_above(), sed_cube_fprint(), sed_cube_mass(), sed_cube_mass_in_suspension(), sed_cube_property_subgrid(), sed_cube_river_mouth_position(), sed_cube_sediment_mass(), sed_cube_y_slope(), sed_cube_y_slope_fast(), sed_get_phe(), sed_property_file_header_new(), sed_tripod_measure(), squall(), and xshore().
double sed_cube_y_slope | ( | const Sed_cube | s, | |
gssize | i, | |||
gssize | j | |||
) |
Definition at line 632 of file sed_cube.c.
References eh_is_in_domain(), eh_require, sed_cube_water_depth(), and sed_cube_y_res().
Referenced by diffuse_sediment(), get_sediment_flux(), move_sediment(), sed_cube_slope(), sed_cube_slope_dir(), sed_cube_slope_vector(), and update_bruun_zone_data().
double sed_cube_y_slope_fast | ( | const Sed_cube | s, | |
gssize | i, | |||
gssize | j | |||
) |
Definition at line 654 of file sed_cube.c.
References eh_is_in_domain(), eh_require, sed_cube_water_depth(), and sed_cube_y_res().
Eh_dbl_grid sed_cube_y_slope_grid | ( | const Sed_cube | s, | |
gssize * | index | |||
) |
Definition at line 750 of file sed_cube.c.
References S_Y_SLOPE_FUNC, and sed_cube_grid().
Referenced by diffuse_sediment_2(), and get_sediment_flux().
double sed_cube_z_res | ( | const Sed_cube | s | ) |
Definition at line 982 of file sed_cube.c.
References eh_require.
Referenced by rain_sediment_3(), sed_cube_fprint(), sed_cube_n_rows_between(), sed_cube_property_subgrid(), sed_property_file_header_new(), and squall().
GList* sed_find_next_shore | ( | GList * | shore_list, | |
Sed_cube | s, | |||
Eh_ind_2 * | pos, | |||
GList * | ignore_list | |||
) |
Definition at line 1860 of file sed_cube.c.
References eh_compare_ind_2(), eh_ind_2_create(), eh_ind_2_dup(), Eh_ind_2::i, is_shore_cell(), and Eh_ind_2::j.
Referenced by sed_cube_find_shore_line().
Definition at line 2320 of file sed_cube.c.
References eh_free, eh_ind_2_dup(), and sed_cube_find_river_path().
Referenced by sed_cube_find_river_mouth().
GArray* sed_get_floor | ( | char * | file, | |
GArray * | y_array, | |||
GError ** | error | |||
) |
Read elevation data from a file into a GArray.
Read a file of elevation data and interpolate to specified x-positions. This differs from sed_get_floor_vec in that here the input x-positions and output elevations are held in GArray's rather than standard arrays.
file | A name of an elevation file. | |
y_array | A GArray of y-positions. | |
error | A GError |
Definition at line 3646 of file sed_cube.c.
References eh_data_record_destroy(), eh_data_record_row(), eh_data_record_scan_file(), eh_data_record_size(), eh_dbl_array_is_monotonic_up(), EH_FAST_DIM_COL, eh_free, eh_isnan(), eh_return_val_if_fail, and interpolate().
Referenced by main(), and sed_get_floor_vec().
Eh_dbl_grid sed_get_floor_3_default | ( | int | floor_type, | |
int | n_x, | |||
int | n_y | |||
) |
Definition at line 2712 of file sed_cube.c.
References eh_dbl_grid_set_val(), and eh_grid_new.
Referenced by avulsion_full().
Eh_sequence* sed_get_floor_sequence_2 | ( | const char * | file, | |
double * | y_i, | |||
gssize | n_yi, | |||
GError ** | error | |||
) |
Definition at line 2810 of file sed_cube.c.
References eh_add_to_sequence(), eh_create_sequence(), eh_dbl_array_is_monotonic_up(), eh_dlm_read_full_swap(), eh_free, eh_free_2, eh_grid_data_start(), eh_grid_n_y(), eh_grid_new, eh_grid_y(), eh_new, eh_return_val_if_fail, eh_str_parse_key_value(), eh_symbol_table_dbl_value(), eh_symbol_table_destroy(), eh_symbol_table_has_label(), interpolate(), S_KEY_SUBSIDENCE_TIME, SED_CUBE_ERROR, SED_CUBE_ERROR_DATA_BAD_RANGE, SED_CUBE_ERROR_DATA_NOT_MONOTONIC, SED_CUBE_ERROR_INSUFFICIENT_DATA, SED_CUBE_ERROR_NO_TIME_LABEL, SED_CUBE_ERROR_NOT_TWO_COLUMNS, and SED_CUBE_ERROR_TIME_NOT_MONOTONIC.
Referenced by init_bbl_data(), and init_subsidence_data().
Eh_sequence* sed_get_floor_sequence_3 | ( | const char * | file, | |
double | dx, | |||
double | dy, | |||
GError ** | error | |||
) |
Definition at line 2941 of file sed_cube.c.
References eh_add_to_sequence(), eh_create_sequence(), eh_fopen_error(), eh_fread_dbl_swap, eh_fread_int32_swap, eh_grid_data_start(), eh_grid_new, eh_grid_x(), eh_grid_y(), eh_return_val_if_fail, Eh_sequence::len, SED_CUBE_ERROR, SED_CUBE_ERROR_BAD_GRID_DIMENSION, SED_CUBE_ERROR_TIME_NOT_MONOTONIC, SED_CUBE_ERROR_TRUNCATED_FILE, and Eh_sequence::t.
Referenced by init_bbl_data(), and init_subsidence_data().
int sed_get_floor_vec | ( | char * | filename, | |
double * | y, | |||
int | len, | |||
double * | z, | |||
GError ** | error | |||
) |
Read floor elevation data from a file into an array.
Read a file of elevation data and interpolate to specified x-positions. The output vector, y must be allocated enough size to hold the elevation data.
filename | A name of an input file. | |
y | A pointer to an array of y-positions. | |
len | Number of positions (length of x, and y). | |
z | A pointer to an array of elevations. | |
error | A GError |
Definition at line 3580 of file sed_cube.c.
References eh_require, eh_return_val_if_fail, and sed_get_floor().
Referenced by main().
Eh_ind_2 sed_ind2sub | ( | gssize | ind, | |
gssize | n_y | |||
) |
gboolean sed_mode_is | ( | Sedflux_mode | mode | ) |
Definition at line 74 of file sed_cube.c.
gboolean sed_mode_is_2d | ( | void | ) |
Definition at line 80 of file sed_cube.c.
References SEDFLUX_MODE_2D.
Referenced by run_avulsion(), run_isostasy(), run_plume_hyper_inflow(), run_plume_hyper_sakura(), run_plume_hypo(), sed_bathy_grid_scan(), and sedflux_init().
gboolean sed_mode_is_3d | ( | void | ) |
Definition at line 86 of file sed_cube.c.
References SEDFLUX_MODE_3D.
Referenced by deposit_in_river(), erode_river_profile(), init_avulsion(), init_bbl(), init_bbl_data(), init_plume_hypo(), init_subsidence_data(), run_bedload(), run_diffusion(), run_isostasy(), run_plume_hypo(), run_turbidity_inflow(), run_turbidity_sakura(), run_xshore(), sed_bathy_grid_scan(), sedflux_get_file_name_interactively(), and sedflux_init().
void sed_mode_set | ( | Sedflux_mode | mode | ) |
Definition at line 66 of file sed_cube.c.
References SEDFLUX_MODE_NOT_SET.
Referenced by sedflux_parse_command_line().
void sed_river_attach_susp_grid | ( | Sed_riv | r, | |
Sed_cell_grid | g | |||
) |
Definition at line 1577 of file sed_cube.c.
References eh_require, sed_cube_destroy_in_suspension(), and SED_CUBE_SUSP_GRID.
Referenced by sed_cube_add_trunk(), and sed_cube_split_river().
void sed_river_detach_susp_grid | ( | Sed_riv | r | ) |
Definition at line 1590 of file sed_cube.c.
References SED_CUBE_SUSP_GRID.
Referenced by sed_cube_remove_river().
Sed_cell_grid sed_river_get_susp_grid | ( | Sed_riv | r | ) |
Definition at line 1584 of file sed_cube.c.
References SED_CUBE_SUSP_GRID.
Referenced by sed_cube_in_suspension(), sed_cube_read(), and sed_cube_write().
int sed_rotate_direction | ( | int | dir, | |
int | angle | |||
) |
Rotate directions in jumps of 90 degrees.
Given a cardinal direction, find the direction that is rotated by a given number of 90-degree jumps. Positive jumps are counter-clockwise.
dir | A cardinal direction. | |
angle | The number of 90-degree jumps to make. |
Definition at line 2069 of file sed_cube.c.
Referenced by sed_cube_find_adjacent_shore_edge().
double** sed_scan_sea_level_curve | ( | const char * | file, | |
gint * | len, | |||
GError ** | err | |||
) |
Definition at line 2752 of file sed_cube.c.
References eh_dbl_array_is_monotonic_up(), eh_dlm_read_swap(), eh_free_2, eh_return_val_if_fail, SED_CUBE_ERROR, SED_CUBE_ERROR_DATA_BAD_RANGE, SED_CUBE_ERROR_INSUFFICIENT_DATA, SED_CUBE_ERROR_NOT_TWO_COLUMNS, and SED_CUBE_ERROR_TIME_NOT_MONOTONIC.
Referenced by init_sea_level().
Eh_ind_2 sed_shift_index_over_edge | ( | gssize | i, | |
gssize | j, | |||
int | edge | |||
) |
Get the indices of the cell accross some cell's edge.
i | The first index to a cell within a rectangular grid. | |
j | The second index to a cell within a rectangular grid. | |
edge | The edge of the cell over which to move. |
Definition at line 2110 of file sed_cube.c.
References Eh_ind_2::i, Eh_ind_2::j, S_EAST_EDGE, S_NORTH_EDGE, S_SOUTH_EDGE, and S_WEST_EDGE.
Referenced by sed_cube_find_adjacent_shore_edge(), and sed_cube_is_shore_edge().
Sed_cube set_cube_set_constants | ( | Sed_cube | s, | |
Sed_constants | new_c | |||
) |