Model:Bio

Bio

Also known as
Model type	Single
Model part of larger framework
Note on status model
Date note status model

Incorporated models or components:

Spatial dimensions
Spatial extent
Model domain	Marine
One-line model description	Biogenic mixing of marine sediments
Extended model description	Biogenic mixing of marine sediments

Keywords:	sediment transport,

Name	Eric Hutton
Type of contact	Model developer
Institute / Organization	CSDMS, INSTAAR, University of Colorado
Postal address 1	1560 30th street
Postal address 2
Town / City	Boulder
Postal code	80305
State	Colorado
Country	United States
Email address	huttone@colorado.edu
Phone
Fax

Supported platforms	Unix, Mac OS, Windows
Other platform
Programming language	C
Other program language
Code optimized	Single Processor
Multiple processors implemented
Nr of distributed processors
Nr of shared processors
Start year development	2008
Does model development still take place?	Yes
If above answer is no, provide end year model development
Code development status	As is, no updates are provided
When did you indicate the 'code development status'?	2020
Model availability
Source code availability (Or provide future intension)	Through web repository
Source web address	https://github.com/mcflugen/sedflux
Source csdms web address
Program license type	GPL v2
Program license type other
Memory requirements	1GB at the most
Typical run time	Seconds to minutes

Describe input parameters
Input format	ASCII
Other input format
Describe output parameters
Output format	ASCII
Other output format
Pre-processing software needed?	No
Describe pre-processing software
Post-processing software needed?	No
Describe post-processing software
Visualization software needed?	No
If above answer is yes
Other visualization software

Describe processes represented by the model
Describe key physical parameters and equations
Describe length scale and resolution constraints
Describe time scale and resolution constraints
Describe any numerical limitations and issues

Describe available calibration data sets
Upload calibration data sets if available:
Describe available test data sets
Upload test data sets if available:
Describe ideal data for testing

Do you have current or future plans for collaborating with other researchers?

Is there a manual available?	No
Upload manual if available:
Model website if any
Model forum / discussion board

Comments

This part will be filled out by CSDMS staff

DOI model	10.1594/IEDA/100099
For model version	0.1
Year version submitted	2011
Link to file	https://csdms.colorado.edu/pub/models/doi-source-code/sedflux-10.1594.IEDA.100161-2.1.tar.gz

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Hannisdal

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Model citations

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Featured publication(s)	Year	Model described	Type of Reference	Citations
Boudreau, B.P. 1986. Mathematics of tracer mixing in sediments: 1. Spatially dependent, Diffusive mixing. American Journal of Science, 286, 161~198. 10.2475/ajs.286.3.161 (View/edit entry)	1986	Bio	Model overview	261
Boudreau, B.P.; 1986. Mathematics of thacer mixing in sediments: 2. Nonlocal mixing and biological conveyor-belt phenomena. American Journal of Science, 286, 199~238. 10.2475/ajs.286.3.199 (View/edit entry)	1986	Bio	Model overview	180
See more publications of Bio